DRSC/TRiP Functional Genomics Resources

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Protein Alignment vtd and Rec8

DIOPT Version :9

Sequence 1:NP_001015132.1 Gene:vtd / 3354896 FlyBaseID:FBgn0260987 Length:715 Species:Drosophila melanogaster
Sequence 2:NP_064386.2 Gene:Rec8 / 56739 MGIID:1929645 Length:591 Species:Mus musculus


Alignment Length:774 Identity:161/774 - (20%)
Similarity:259/774 - (33%) Gaps:251/774 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 FYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQ-------------PKVKLAL 53
            :|.:::....|..|.|||||....::.|......|:.|:.|.||.             |:.:.:|
Mouse     3 YYPNVLQRHTGCFATIWLAATRGSRLVKREYLNVNVVKTCEEILNYVLVRVQPPVAGLPRPRFSL 67

  Fly    54 RTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFD 118
            ..|..|.:||:|:|.::.:||:.|.......:..|.....:|:    .||::.::.||......:
Mouse    68 YLSAQLQIGVIRVYFQQCQYLVEDIQHILEHLHRAQLRIRIDM----EEADLPSLLLPNCLAMME 128

  Fly   119 TALPELNDIDIEAQFSINQSRADEITMRED-----YGSLSLSLQDDGFGDIG-----FEAETPEI 173
            |.                          ||     :|.:|:..:.....||.     .||.|||.
Mouse   129 TL--------------------------EDAPEPFFGKMSVDPRLPSPFDIPQIRHLLEAATPEK 167

  Fly   174 IRC-SIPSNINDKIFDNDVLENIESLDPHSLDAHADMPGSRLDGDGFGD----SFGQPALF---E 230
            .|. ::|....|....:..|..::|  |..:......|...|..:|..|    |.|...|.   :
Mouse   168 TRKETLPEATPDPRKPDRTLATVQS--PEVITLQEAEPIRMLQIEGEQDLPEISRGDLELLIAEK 230

  Fly   231 DDLFGDPSQPVEQITKESTTVLNADDSDED--AIDN---IHNVPSPATSLVNSIED-------EK 283
            ||......:...::.::....|..|:|.|:  |::.   :..:..||.:.|..|::       ..
Mouse   231 DDAILLEERQRGRLLRQRRASLPLDESREEPRALEGAGLVSALSPPAPAQVEGIQEALPGQVFPP 295

  Fly   284 EENNLNG---HASVSENVPMNEITLVQNEDEGFALAPLDV-----SMYKGVTKAKRKRKLII-DE 339
            |...:.|   .|.::|..|..|:.|.         ||...     |:.:.:.:..|:|:|:. |:
Mouse   296 EVQKMTGWEPGALLTEVTPPQELRLP---------APPSTEKRLPSLQRPLPRRHRRRQLLFWDK 351

  Fly   340 IKNISGEEMKAQLADTSDILTTLDLAPPTKRLMYWKETGGVEKLFSLPSRS--IPARALFGNYNR 402
            ...||.|:.:.|| .|........:|.|.||::    |...| ||..|:.|  :|...|      
Mouse   352 ETQISREKFEEQL-QTGAHCWEYPVAQPPKRML----TSPAE-LFRTPTLSGWLPPELL------ 404

  Fly   403 QLFSHSTFFEDFSSVVPMEIL----ALEF-YTKENENALIIFNKKGRKRKNDNMSNLFLDHVPDS 462
            .|::|       .:.||..:|    .||. .|.|.|.|.    .:..:||.:.:|.:        
Mouse   405 GLWTH-------CAQVPQRMLRQRPQLETEETVEEERAA----DEEERRKTEALSEI-------- 450

  Fly   463 VVQSLEAPEVLRANHKSLGVSTVSVEIVSKEQESISCQNELTFFDNMRSPDLLSLNEMEQ----- 522
                    ||||...:..|...:|.|:..:..|....:..|.      .|:..:.:|..|     
Mouse   451 --------EVLREAQEPSGPLMLSSELSLEAAEDEKSRTSLI------PPEWWAWSEEGQPEPPA 501

  Fly   523 FSSINELPLTPRNMNHEMGDDFNQGDSTPAGLDHGHATPQHGNIGEMDHDSVIPTKKTAVILNES 587
            ...:.|||..|..|                                       |.:         
Mouse   502 LPMLPELPEVPMEM---------------------------------------PPR--------- 518

  Fly   588 VGTSVLSDNGVSKRTNNILKGWDNYEIPSFVGQNHGDEQMENETDEQFEERVLNKRAAHLFIDVR 652
                                                        .|...|.||  ||..|.:.  
Mouse   519 --------------------------------------------PELSSEAVL--RAVALKLQ-- 535

  Fly   653 AHFIAKDSLELSQLTSGNS-RKQAAQKFYSLLVLKKFKVLHIDQSAPYADITITRGPTF 710
                |...|:.|.|....| ||.|::.||.||||...|:|.::|..||..:.|..||.|
Mouse   536 ----ANKELDFSSLVPPLSPRKLASRVFYLLLVLSTQKILLVEQQKPYGPLLIRPGPKF 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vtdNP_001015132.1 Rad21_Rec8_N 1..106 CDD:282655 29/116 (25%)
Rad21_Rec8 657..710 CDD:282654 22/53 (42%)
Rec8NP_064386.2 Rad21_Rec8_N 1..112 CDD:282655 27/112 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..186 6/22 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 316..336 5/28 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 420..447 8/30 (27%)
Rad21_Rec8 536..590 CDD:282654 22/53 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848234
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1213
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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