DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vtd and rec8

DIOPT Version :9

Sequence 1:NP_001015132.1 Gene:vtd / 3354896 FlyBaseID:FBgn0260987 Length:715 Species:Drosophila melanogaster
Sequence 2:NP_596059.1 Gene:rec8 / 2540458 PomBaseID:SPBC29A10.14 Length:561 Species:Schizosaccharomyces pombe


Alignment Length:645 Identity:127/645 - (19%)
Similarity:228/645 - (35%) Gaps:214/645 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFYEHIILAK-KGPLARIWLAA-----HWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHL 59
            |||...:|.| ||.:..|||||     |..:|:.|..:...:|:::.:.:......||||.|.:|
pombe     1 MFYNQDVLTKEKGGMGVIWLAATLGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEPLALRLSSNL 65

  Fly    60 LLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTALPEL 124
            ::||.|:::.:..:..:..:...::::...                          |..|:.| .
pombe    66 MIGVTRVWAHQYSFFHSQVSTLHLRVRKEL--------------------------DHFTSKP-F 103

  Fly   125 NDIDIEAQFSINQSRADEITMRED---------YGSLSLSLQDDGFGDIGF--EAETPEIIRCSI 178
            .:|||:.:    |:...::.:.||         |.:.:|...|.......|  ..|.|.|     
pombe   104 KNIDIQNE----QTNPKQLLLAEDPAFIPEVSLYDAFNLPSVDLHVDMSSFTQPKENPNI----- 159

  Fly   179 PSNINDKIFDNDVLENIESLDPHSLDAHADMP-----GSRLDGDGFGDSFGQPALFEDDLFGDPS 238
                       .|||.:.....:.::...:..     .|.:..|....|..:|..||.|..||  
pombe   160 -----------SVLETLPDSTSYLINTSQNYSLRNNVSSFVYEDSRAFSTEEPLDFEFDENGD-- 211

  Fly   239 QPVEQITKESTTVLNADDS-------------------------------DEDAIDNIHNVPSPA 272
              ::::||.:   :|:|.|                               |||.:.    :|.|.
pombe   212 --IQELTKGT---INSDPSLQAASQHSNLGSVQREYNSEEQESRIHMFEIDEDVLP----LPVPL 267

  Fly   273 TSLVNSIEDEKEENNLNGH-----ASVSENVPMNEITLVQ---NEDEGFALAPLDVSMY---KGV 326
            .|:::|..:|.|...|...     ....||:.::..||.|   |..|  .:..|:.:.|   :|.
pombe   268 QSVMDSEHNENEPRALKRRKVQKLLEPDENIELSTRTLSQWRKNYVE--RMIALEATKYVRRRGA 330

  Fly   327 TKAKRKR--------------KLIIDEIK--NISGEEMKAQL--ADTSDILTTLDLAPPTKRLMY 373
            :.||:|.              |..|:::|  |.:..|:...|  .|||::....|:.......:.
pombe   331 SSAKKKELNKFFDWESFHPLLKPWIEKLKPSNNTPSEIDDVLRNIDTSEVEVGRDVQGELGLNIP 395

  Fly   374 W---------------KETGGVEKLFSLP------------SRSIPARALFGNYNRQLFSHSTFF 411
            |               .:||...   |.|            |.|:|:|..|    ......|.|.
pombe   396 WNTSSRSNSAINSKSHSQTGSEH---STPLLDTKYRKRLPHSPSMPSRVEF----LPALESSQFH 453

  Fly   412 EDFSSVVPMEILALEFYTKEN---ENALI------------------IFNKKGRKRKNDNMSNLF 455
            |..:|.:.:: |:.:|...:|   |||.:                  |:...||...:..:.|  
pombe   454 ETLNSELSLQ-LSDDFVLYKNTQEENAHLMLSMEKECANFYEYAKTAIYENNGRITFSSLLPN-- 515

  Fly   456 LDHVPDSVVQSLEAPEVLRANHKSLGVSTVSVEIVSKEQESISCQNELTFFDNMRSPDLL 515
                      .|:.|.|.:|....|.::|.|..:|.:::.    .:|::...|::|.|.:
pombe   516 ----------DLKRPVVAQAFSHLLSLATKSAFLVKQDKP----YSEISVSLNLKSTDAI 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vtdNP_001015132.1 Rad21_Rec8_N 1..106 CDD:282655 25/110 (23%)
Rad21_Rec8 657..710 CDD:282654
rec8NP_596059.1 Rad21_Rec8_N 1..93 CDD:282655 25/91 (27%)
Rad21_Rec8 503..557 CDD:282654 13/69 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1213
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.