DRSC/TRiP Functional Genomics Resources

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Protein Alignment vtd and Rad21

DIOPT Version :10

Sequence 1:NP_001015132.1 Gene:vtd / 3354896 FlyBaseID:FBgn0260987 Length:715 Species:Drosophila melanogaster
Sequence 2:NP_033035.3 Gene:Rad21 / 19357 MGIID:108016 Length:635 Species:Mus musculus


Alignment Length:757 Identity:288/757 - (38%)
Similarity:395/757 - (52%) Gaps:172/757 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHLLLGVVR 65
            |||.|.:|:|:||||:||||||||||:|||||||.|:|.|||.|:.||||:||||||||||||||
Mouse     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLLLGVVR 65

  Fly    66 IYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTALPELNDIDIE 130
            ||.||||||||||||||:|||||||||:|||||.:|||..|||||||.|||||..||:|:|||:.
Mouse    66 IYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQPLPDLDDIDVA 130

  Fly   131 AQFSINQSRADEITMREDYGSLSLSLQDDGFGDIGFEAETPEIIRCSIPSNINDKIF-DNDVLEN 194
            .|||:||||.:||||||:.|::|: ||::.|||.|.:..  ||:|       ....| |:|:|.:
Mouse   131 QQFSLNQSRVEEITMREEVGNISI-LQENDFGDFGMDDR--EIMR-------EGSAFEDDDMLVS 185

  Fly   195 IES----LDPHSLDAHADMPGSRLD------GDGFGDSFGQPALFEDD---------LFGD---- 236
            ..:    |:|....::.:...:.|:      .|.||:  |......||         :|.|    
Mouse   186 TSASNLLLEPEQSTSNLNEKMNHLEYEDQYKDDNFGE--GNDGGILDDKLISNNDGGIFDDPPAL 248

  Fly   237 -------PSQPVEQITKESTTVLNADDSDEDAIDNIHNVPSPATSLVNSIEDEKEENNLNGHASV 294
                   |.||..            ||.|||...::....||.:  |:.:|              
Mouse   249 SEAGVMLPEQPAH------------DDMDEDDNGSLGGPDSPDS--VDPVE-------------- 285

  Fly   295 SENVPM----NEITLVQNEDEGFALAPLDVSMYKGVTKAKRKRKLIIDEIKNISGEEMKAQLADT 355
                ||    ::.|||.||:|.|||.|:|:::.:  ||||||||||:|.:|.:..:.::|||:|.
Mouse   286 ----PMPTMTDQTTLVPNEEEAFALEPIDITVKE--TKAKRKRKLIVDSVKELDSKTIRAQLSDY 344

  Fly   356 SDILTTLDLAPPTKRLMYWKETGGVEKLFSLPSRSIPARALFGNYNRQLFSHSTFFEDFSSVVPM 420
            |||:||||||||||:||.|||||||||||.|     ||:.|:.|...:||:..     .:.:||.
Mouse   345 SDIVTTLDLAPPTKKLMMWKETGGVEKLFFL-----PAQPLWNNRLLKLFTRC-----LTPLVPE 399

  Fly   421 EILALEFYTKENENALIIFNKKGRKRKNDNMSNLFLDHVPDSVVQSLEAPEVLRANHKSLGVSTV 485
            ::                    .::||.....||      |..::..|.|||.|           
Mouse   400 DL--------------------RKRRKGGEADNL------DEFLKEFENPEVPR----------- 427

  Fly   486 SVEIVSKEQESISCQNELTFFDNMRSPDLLSLNEME-QFSSINEL---PLTPRNMNHEMGDDFNQ 546
              |....:|:....|.::.....:..|..|..:.|| ..::|.|.   |..|:.:..:.|    |
Mouse   428 --EEQQPQQQQPQPQRDVIDEPIIEEPSRLQDSVMEASRTTIEESAMPPPPPQGVKRKAG----Q 486

  Fly   547 GDSTPAGLDHGHATPQHGNIGEMDHDSV-IPTKKTAVILNESVGTSVLSDNGVSKRTNNILKGWD 610
            .|..|:      ..||  .:.:|:...| :|.::...|........:|.:....|..        
Mouse   487 IDPEPS------IPPQ--QVEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEK-------- 535

  Fly   611 NYEIPSFVGQNHGDEQMENET----DEQFEERVLNKRAAHLFIDVRAHFIAK---DSLELSQLTS 668
                     :...:|:.|:|.    |:..|||..|||...:...:: ..:||   :|:.|.:|..
Mouse   536 ---------EKEEEEEEEDEDASGGDQDQEERRWNKRTQQMLHGLQ-RALAKTGAESISLLELCR 590

  Fly   669 GNSRKQAAQKFYSLLVLKKFKVLHIDQSAPYADITITRGPTF 710
            ..:|||||.||||.|||||.:.:.:.|..||:||..|.||.|
Mouse   591 NTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPRF 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vtdNP_001015132.1 Rad21_Rec8_N 1..103 CDD:461446 82/101 (81%)
Rad21_Rec8_M_NXP1-like 327..404 CDD:439294 47/76 (62%)
Rad21_Rec8 657..710 CDD:335912 27/55 (49%)
Rad21NP_033035.3 Rad21_Rec8_N 1..104 CDD:461446 83/102 (81%)
Required for interaction with SMARCA5. /evidence=ECO:0000250|UniProtKB:O60216 126..282 52/181 (29%)
Interaction with NIPBL. /evidence=ECO:0000250|UniProtKB:O60216 154..171 7/19 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..285 10/40 (25%)
Interaction with WAPL and PDS5B. /evidence=ECO:0000250 287..403 63/147 (43%)
Rad21_Rec8_M_NXP1-like 316..395 CDD:439294 49/88 (56%)
Interaction with STAG1. /evidence=ECO:0000250 362..403 20/70 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 423..496 19/95 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 521..563 10/58 (17%)
Rad21_Rec8 578..632 CDD:335912 25/53 (47%)

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