DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rl and mapk12a

DIOPT Version :9

Sequence 1:NP_001015122.1 Gene:rl / 3354888 FlyBaseID:FBgn0003256 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_571482.1 Gene:mapk12a / 30681 ZFINID:ZDB-GENE-990415-257 Length:363 Species:Danio rerio


Alignment Length:352 Identity:155/352 - (44%)
Similarity:217/352 - (61%) Gaps:14/352 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 IRGQIFEVGPRYIKLAYIGEGAYGMVVSADDTLTNQRVAIKKI-SPFEHQTYCQRTLREITILTR 90
            |...|:||..||..|..:|.||||.|..|.|..|..:|||||: .||:...:.:|..||:.:|..
Zfish    14 INKTIWEVPDRYKDLKQVGTGAYGTVCYALDRRTGAKVAIKKLHRPFQSDLFAKRAYRELRLLKH 78

  Fly    91 FKHENIIDIRDILRVD-SIDQMRDVYIVQCLMETDLYKLLKTQRLSNDHICYFLYQILRGLKYIH 154
            .||:|:|.:.|:...| |:|:..:.|:|...|.|||.||:|.:|||.:.:.|.:||:|:||||||
Zfish    79 MKHDNVIGLVDVFTADLSLDRFHNFYLVMPFMGTDLGKLMKMERLSEERVQYLVYQMLKGLKYIH 143

  Fly   155 SANVLHRDLKPSNLLLNKTCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYT 219
            :|.::||||||.||.:|:.|:|||.||||||..|.|      :|.||.||||||||::|:...||
Zfish   144 AAGIIHRDLKPGNLAINEECELKILDFGLARQTDSE------MTGYVVTRWYRAPEVILSWMHYT 202

  Fly   220 KSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGVLGSPSRDDLECIINEKARNYLESLPFKP 284
            :::||||||||:||||..:|:|.|..:||||..|:.|.|:||::....:.:|.||||:..||...
Zfish   203 QTVDIWSVGCIMAEMLLGKPLFKGHDHLDQLMEIMKVTGTPSKEFTAKLQSEDARNYVTKLPRFR 267

  Fly   285 NVPWAKLFPNADALALDLLGKMLTFNPHKRIPVEEALAHPYLEQYYDPGDEPVAEVPFRINMEND 349
            ......|.||.:..|:.:|..||..:|..||...||||.|:..::.:|.:|..|. |:..:::..
Zfish   268 KKDLRILLPNVNPQAIKVLEGMLLLDPESRITAAEALAFPFFSEFREPEEETEAP-PYDHSLDEA 331

  Fly   350 DISRDALKSLIFEETLKFKERQPDNAP 376
            |.|.:..|.|.|.|.|.|   ||  ||
Zfish   332 DQSLEQWKRLTFTEILTF---QP--AP 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rlNP_001015122.1 STKc_ERK1_2_like 32..366 CDD:270839 147/335 (44%)
S_TKc 38..326 CDD:214567 134/289 (46%)
mapk12aNP_571482.1 PKc_like 9..351 CDD:304357 151/346 (44%)
S_TKc 25..309 CDD:214567 134/289 (46%)
TXY 181..183 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0660
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.