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Protein Alignment rl and Mapk1

DIOPT Version :9

Sequence 1:	NP_001015122.1	Gene:	rl / 3354888	FlyBaseID:	FBgn0003256	Length:	376	Species:	Drosophila melanogaster
Sequence 2:	NP_001033752.1	Gene:	Mapk1 / 26413	MGIID:	1346858	Length:	358	Species:	Mus musculus

Alignment Length:	344	Identity:	283/344 - (82%)
Similarity:	309/344 - (89%)	Gaps:	0/344 - (0%)

- Green bases have known domain annotations that are detailed below.

  Fly    25 EVIRGQIFEVGPRYIKLAYIGEGAYGMVVSADDTLTNQRVAIKKISPFEHQTYCQRTLREITILT 89
            |::|||:|:|||||..|:||||||||||.||.|.|...|||||||||||||||||||||||.||.
Mouse    10 EMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILL 74

  Fly    90 RFKHENIIDIRDILRVDSIDQMRDVYIVQCLMETDLYKLLKTQRLSNDHICYFLYQILRGLKYIH 154
            ||:|||||.|.||:|..:|:||:||||||.|||||||||||||.|||||||||||||||||||||
Mouse    75 RFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH 139

  Fly   155 SANVLHRDLKPSNLLLNKTCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYT 219
            |||||||||||||||||.|||||||||||||:|||:|||||||||||||||||||||||||||||
Mouse   140 SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYT 204

  Fly   220 KSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGVLGSPSRDDLECIINEKARNYLESLPFKP 284
            ||||||||||||||||||||||||||||||||||||:|||||::||.||||.||||||.|||.|.
Mouse   205 KSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKN 269

  Fly   285 NVPWAKLFPNADALALDLLGKMLTFNPHKRIPVEEALAHPYLEQYYDPGDEPVAEVPFRINMEND 349
            .|||.:||||||:.|||||.|||||||||||.||:|||||||||||||.|||:||.||:.:||.|
Mouse   270 KVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELD 334

  Fly   350 DISRDALKSLIFEETLKFK 368
            |:.::.||.||||||.:|:
Mouse   335 DLPKEKLKELIFEETARFQ 353

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.