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Protein Alignment rl and Mapk11

DIOPT Version :9

Sequence 1:	NP_001015122.1	Gene:	rl / 3354888	FlyBaseID:	FBgn0003256	Length:	376	Species:	Drosophila melanogaster
Sequence 2:	NP_035291.4	Gene:	Mapk11 / 19094	MGIID:	1338024	Length:	364	Species:	Mus musculus

Alignment Length:	348	Identity:	165/348 - (47%)
Similarity:	231/348 - (66%)	Gaps:	9/348 - (2%)

- Green bases have known domain annotations that are detailed below.

  Fly    31 IFEVGPRYIKLAYIGEGAYGMVVSADDTLTNQRVAIKKIS-PFEHQTYCQRTLREITILTRFKHE 94
            ::||..|...|..:|.||||.|.||.|....|:||:||:| ||:...:.:||.||:.:|...|||
Mouse    17 VWEVPQRLQGLRPVGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHLKHE 81

  Fly    95 NIIDIRDILR-VDSIDQMRDVYIVQCLMETDLYKLLKTQRLSNDHICYFLYQILRGLKYIHSANV 158
            |:|.:.|:.. ..||:...:||:|..||..||..::|.|.||::|:.:.:||:||||||||||.:
Mouse    82 NVIGLLDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHVQFLVYQLLRGLKYIHSAGI 146

  Fly   159 LHRDLKPSNLLLNKTCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 223
            :||||||||:.:|:.|:|:|.||||||.||.|      :|.|||||||||||||||...|.:::|
Mouse   147 IHRDLKPSNVAVNEDCELRILDFGLARQADEE------MTGYVATRWYRAPEIMLNWMHYNQTVD 205

  Fly   224 IWSVGCILAEMLSNRPIFPGKHYLDQLNHILGVLGSPSRDDLECIINEKARNYLESLPFKPNVPW 288
            |||||||:||:|..:.:|||..|:|||..|:.|:|:||.:.|..|.:|.||.|::|||..|....
Mouse   206 IWSVGCIMAELLQGKALFPGNDYIDQLKRIMEVVGTPSPEVLAKISSEHARTYIQSLPPMPQKDL 270

  Fly   289 AKLFPNADALALDLLGKMLTFNPHKRIPVEEALAHPYLEQYYDPGDEPVAEVPFRINMENDDISR 353
            :.:|..|:.||:||||:||..:..:|:...|||||.|..||:||.|||.|| |:..::|..:.:.
Mouse   271 SSVFHGANPLAIDLLGRMLVLDSDQRVSAAEALAHAYFSQYHDPDDEPEAE-PYDESVEAKERTL 334

  Fly   354 DALKSLIFEETLKFKERQPDNAP 376
            :..|.|.::|.|.||..:|...|
Mouse   335 EEWKELTYQEVLSFKPLEPSQLP 357

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.