DRSC/TRiP Functional Genomics Resources

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Protein Alignment rl and jnk-1

DIOPT Version :9

Sequence 1:NP_001015122.1 Gene:rl / 3354888 FlyBaseID:FBgn0003256 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001021270.1 Gene:jnk-1 / 177460 WormBaseID:WBGene00002178 Length:463 Species:Caenorhabditis elegans


Alignment Length:377 Identity:143/377 - (37%)
Similarity:222/377 - (58%) Gaps:30/377 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SSGSVVNGTGSTEVPQSNAEVIRGQI-FEVGPRYIKLAYIGEGAYGMVVSADDTLTNQRVAIKKI 69
            :.|.::....|..||::...|..|:. ..|..||..|..||.||.|:|.||.||:.|::|||||:
 Worm    86 TGGGILMEPSSIHVPENYYSVTIGEAQMVVLKRYQNLRLIGSGAQGIVCSAFDTVRNEQVAIKKL 150

  Fly    70 S-PFEHQTYCQRTLREITILTRFKHENIIDIRDILRVD-SIDQMRDVYIVQCLMETDLYKLLKTQ 132
            | ||::.|:.:|..||:.:::...|:|||.|.:..... .:|:..|:|||..||:.:|.::::..
 Worm   151 SRPFQNVTHAKRAYRELKLMSLVNHKNIIGILNCFTPQKKLDEFNDLYIVMELMDANLCQVIQMD 215

  Fly   133 RLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNKTCDLKICDFGLARIADPEHDHTGFL 197
             |.::.:.|.|||:|.|::::|||.::||||||||:::...|.|||.||||||.|    .....:
 Worm   216 -LDHERLSYLLYQMLCGIRHLHSAGIIHRDLKPSNIVVRSDCTLKILDFGLARTA----IEAFMM 275

  Fly   198 TEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGVLGSPSR 262
            |.||.||:|||||::| ..||.:::|:||:|||..|::..|.:|||..::||...|:..||:|.|
 Worm   276 TPYVVTRYYRAPEVIL-GMGYKENVDVWSIGCIFGELIRGRVLFPGGDHIDQWTRIIEQLGTPDR 339

  Fly   263 DDLECIINEKARNYLESLPFKPNVPWAKLFPN------AD------ALALDLLGKMLTFNPHKRI 315
            ..|| .:....|||:|:.|.....|:..||.:      ||      |.|.|||.:||..:|.:||
 Worm   340 SFLE-RLQPTVRNYVENRPRYQATPFEVLFSDNMFPMTADSSRLTGAQARDLLSRMLVIDPERRI 403

  Fly   316 PVEEALAHPYLEQYYDP----GDEPVAEVPFRINMENDDISRDALKSLIFEE 363
            .|::||.|||:..::|.    ...|   :|:..||:.:. :.|:.:..||.|
 Worm   404 SVDDALRHPYVNVWFDEIEVYAPPP---LPYDHNMDVEQ-NVDSWREHIFRE 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rlNP_001015122.1 STKc_ERK1_2_like 32..366 CDD:270839 137/350 (39%)
S_TKc 38..326 CDD:214567 125/301 (42%)
jnk-1NP_001021270.1 STKc_JNK 118..452 CDD:270840 136/345 (39%)
S_TKc 119..414 CDD:214567 125/301 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D741207at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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