DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rl and mapk13

DIOPT Version :9

Sequence 1:NP_001015122.1 Gene:rl / 3354888 FlyBaseID:FBgn0003256 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_001337833.2 Gene:mapk13 / 100002318 ZFINID:ZDB-GENE-041111-17 Length:362 Species:Danio rerio


Alignment Length:347 Identity:146/347 - (42%)
Similarity:213/347 - (61%) Gaps:15/347 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 EVIRGQIFEVGPRYIKLAYIGEGAYGMVVSADDTLTNQRVAIKKI-SPFEHQTYCQRTLREITIL 88
            |.|...::||..:|:.|..||.||||.|.|:.:..|.::|||||: .||:.:.:.:|..||:.:|
Zfish    10 EEINSTVWEVPAKYVCLKQIGTGAYGSVCSSINNKTKEKVAIKKLHRPFQSEIFAKRAYRELRLL 74

  Fly    89 TRFKHENIIDIRDILR-VDSIDQMRDVYIVQCLMETDLYKLLKTQRLSNDHICYFLYQILRGLKY 152
            ...||||:|.:.|:.. ...:|:.:|.|:|...|.|||.|:  ...|:.|.|.:.:||:|.||||
Zfish    75 KHMKHENVIGLLDVFTPATRLDEFQDFYLVMPYMYTDLSKV--KGLLTEDRIQFLVYQMLCGLKY 137

  Fly   153 IHSANVLHRDLKPSNLLLNKTCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKG 217
            ||.|.::||||||.||.:|:.|:|||.||||||..|.|      :|.||.||||||||::||...
Zfish   138 IHGAGIIHRDLKPGNLAVNQDCELKILDFGLARHTDAE------MTGYVVTRWYRAPEVILNWMH 196

  Fly   218 YTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGVLGSPSRDDLECIINEKARNYLESLPF 282
            ||:::||||||||:.||.:.:.:|.||.|:|||..|:.|.|:|..:.:|.:.:.:|::|:.|||.
Zfish   197 YTQTVDIWSVGCIMGEMFNGKTLFKGKDYMDQLTQIMKVAGTPGPEFVEKLESPEAKSYVRSLPH 261

  Fly   283 KPNVPWAKLFPNADALALDLLGKMLTFNPHKRIPVEEALAHPYLEQYYDPGD--EPVAEVPFRIN 345
            .|:..::.|||.|...|::||.|||..:...|:....||||.|.:...||.|  ||.|   :..:
Zfish   262 YPHRDFSTLFPRASKKAVELLEKMLVLDADARLTASGALAHSYFDGLRDPDDWPEPTA---YDDS 323

  Fly   346 MENDDISRDALKSLIFEETLKF 367
            .:|..:..:..|.|.|:|...|
Zfish   324 YDNATLPLEEWKRLSFKEVRSF 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rlNP_001015122.1 STKc_ERK1_2_like 32..366 CDD:270839 143/337 (42%)
S_TKc 38..326 CDD:214567 129/289 (45%)
mapk13XP_001337833.2 PKc_like 7..347 CDD:304357 146/347 (42%)
S_TKc 23..305 CDD:214567 129/289 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0660
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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