DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment klhl10 and AT1G55270

DIOPT Version :9

Sequence 1:NP_001015100.2 Gene:klhl10 / 3354863 FlyBaseID:FBgn0040038 Length:767 Species:Drosophila melanogaster
Sequence 2:NP_564684.1 Gene:AT1G55270 / 841972 AraportID:AT1G55270 Length:434 Species:Arabidopsis thaliana


Alignment Length:359 Identity:85/359 - (23%)
Similarity:129/359 - (35%) Gaps:94/359 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 LNPQAD-------ELT--TPPLAMPRLPHEVIFAIGGWSGGTSKGCIETYDTRAD---------R 372
            :||.|.       |.|  .||| :|.||.::..|           |:... .||:         |
plant    57 INPNAHRRKNSKRERTRIQPPL-LPGLPDDLAVA-----------CLIRV-PRAEHRKLRLVCKR 108

  Fly   373 WVTINAEDPAGPRAYHGTAVLGFK-----IFSIGGYDGVEYFNTCRVFDAVKKKWNEIAPM---H 429
            |..:    .:|...|....:||..     :|. ...||...:||   ||.:.:.|..:.|:   :
plant   109 WYRL----ASGNFFYSQRKLLGMSEEWVYVFK-RDRDGKISWNT---FDPISQLWQPLPPVPREY 165

  Fly   430 CRRCYVSVTELNGM-IYAIGGYDG-HNRLNTVERYNPRTNQWSVIPPMNMQRSDASACTLQERIY 492
            ..........|:|. :|..||.|. ...:..|..||.|||:|...|.|..:|.....|.:...:|
plant   166 SEAVGFGCAVLSGCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLY 230

  Fly   493 ATGGFNGQEC------LDSAEYYDPVTNVWTRIPNMNHRRSGVSCVAFRNQLYVIGGFNGTARLS 551
            ..||    ||      |.|||.|||..|.|:.|.:|:.....:..|.:..:.::.|  .|:.:|.
plant   231 VAGG----ECEGIQRTLRSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKG--LGSHQLV 289

  Fly   552 TGERFDPDTQTWHFIREMNHSRSNFGLEIIDDMIFAIGGFNGVSTISHTECYVAE---------- 606
            ..|.:||:..:|.              .:.|.|   :.|:....|..:...|..:          
plant   290 MSEAYDPEVNSWS--------------PVSDGM---VAGWRNPCTSLNGRLYGLDCRDGCKLRVF 337

  Fly   607 ---TDEWMEATDMNI---VRSALSANNIAGLPNK 634
               ||.|.:..|...   ...:|.|..:..|.||
plant   338 DESTDSWNKFMDSKAHLGNSKSLEAAALVPLHNK 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
klhl10NP_001015100.2 BTB 72..186 CDD:279045
PHA03098 86..610 CDD:222983 78/330 (24%)
BACK 195..298 CDD:285009
Kelch 347..394 CDD:128874 8/55 (15%)
KELCH repeat 385..428 CDD:276965 11/47 (23%)
Kelch 396..442 CDD:128874 10/53 (19%)
Kelch_1 431..476 CDD:279660 14/46 (30%)
KELCH repeat 432..475 CDD:276965 14/44 (32%)
KELCH repeat 479..523 CDD:276965 17/49 (35%)
Kelch 490..536 CDD:128874 17/51 (33%)
Kelch_1 525..570 CDD:279660 8/44 (18%)
KELCH repeat 526..571 CDD:276965 8/44 (18%)
Kelch_1 573..617 CDD:279660 9/56 (16%)
KELCH repeat 573..617 CDD:276965 9/56 (16%)
AT1G55270NP_564684.1 F-box 77..119 CDD:395521 12/58 (21%)
KELCH repeat 170..213 CDD:276965 14/42 (33%)
PHA03098 <171..356 CDD:222983 50/207 (24%)
KELCH repeat 217..263 CDD:276965 17/49 (35%)
KELCH repeat 266..306 CDD:276965 8/55 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1072
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.860

Return to query results.
Submit another query.