DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment klhl10 and AT4G33900

DIOPT Version :9

Sequence 1:NP_001015100.2 Gene:klhl10 / 3354863 FlyBaseID:FBgn0040038 Length:767 Species:Drosophila melanogaster
Sequence 2:NP_567939.1 Gene:AT4G33900 / 829533 AraportID:AT4G33900 Length:379 Species:Arabidopsis thaliana


Alignment Length:427 Identity:81/427 - (18%)
Similarity:136/427 - (31%) Gaps:165/427 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 RFRFLED---LHLKARNYTLRYFTEVAYRNIDILDMSAEDFYSIISDDELNTREEDHVWKLCVKW 264
            ||..|.|   .:..||...|.|.|         |.:.::.|..:::..||               
plant    11 RFLMLPDDLVFNCLARVSRLHYPT---------LSLVSKKFRFLLASKEL--------------- 51

  Fly   265 IDRNPESRKRHVAHLMTGVRLGLMTPKCFMEEVKEHPYVLECEAAKPLIVDTFKFMYDLDFLNPQ 329
                          ..|.:.|| .|..|....|:.|             .|:.:..:.:.:..|.
plant    52 --------------YQTRILLG-GTESCLYVCVRLH-------------TDSEQLHWFIIYQGPN 88

  Fly   330 ADELTTPPLAMPR-----LP------HEVIFAIGGWSGGTSKGCIETYDTRADRWVTINAEDPAG 383
            :.:....|::.|.     ||      || |:||||  |..:|.            .:|||   .|
plant    89 SSKKVLVPISSPNFTSAALPGFVVVGHE-IYAIGG--GSENKN------------ASINA---TG 135

  Fly   384 PRAYHGTAVLGFKIFSIGGYDGVEYFNTCRVFDAVKKKWNEIAPMHCRRCYVSVTELNGMIYAIG 448
            .:.|:.                   .::..|.|:....|.|...|...|.:.|...|:|.||..|
plant   136 SKTYNA-------------------LSSVMVMDSRSHTWREAPSMRVARVFPSACTLDGRIYVTG 181

  Fly   449 GYDGHNRLNTVERYNPRTNQWSV--IPPMNM-QRSDASACTLQERIYA------------TGGFN 498
            |.:..|.:|.:|.::.:|..|..  ||...: :.|:..:.:.|..:|.            .|.:.
plant   182 GCENLNSMNWMEIFDTKTQTWEFLQIPSEEVCKGSEYLSISYQRTVYVGSREKDVTYKMHKGKWR 246

  Fly   499 GQE-CLDSAEYYDPVTNVWTRIPNMNHRRSGVSCVAFRNQLYVIGGFNGTARLSTGERFDPDTQT 562
            |.: ||:..         |:..|:        ||....|..|         |.|.|:      ..
plant   247 GADICLNHG---------WSLDPS--------SCCVIENVFY---------RCSLGD------VR 279

  Fly   563 WHFIREMNHSRSNFGLEIIDDMIFAIGGFNGVSTISH 599
            |:.:::...:              |:.|..|:.|.::
plant   280 WYDLKKREWA--------------ALKGLEGLPTFTN 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
klhl10NP_001015100.2 BTB 72..186 CDD:279045
PHA03098 86..610 CDD:222983 81/427 (19%)
BACK 195..298 CDD:285009 18/97 (19%)
Kelch 347..394 CDD:128874 12/46 (26%)
KELCH repeat 385..428 CDD:276965 5/42 (12%)
Kelch 396..442 CDD:128874 8/45 (18%)
Kelch_1 431..476 CDD:279660 15/46 (33%)
KELCH repeat 432..475 CDD:276965 15/44 (34%)
KELCH repeat 479..523 CDD:276965 9/56 (16%)
Kelch 490..536 CDD:128874 9/58 (16%)
Kelch_1 525..570 CDD:279660 8/44 (18%)
KELCH repeat 526..571 CDD:276965 8/44 (18%)
Kelch_1 573..617 CDD:279660 4/27 (15%)
KELCH repeat 573..617 CDD:276965 4/27 (15%)
AT4G33900NP_567939.1 F-box 11..54 CDD:395521 13/80 (16%)
PHA03098 <88..288 CDD:222983 55/268 (21%)
KELCH repeat 109..162 CDD:276965 18/89 (20%)
Kelch_1 164..205 CDD:396078 13/40 (33%)
KELCH repeat 165..205 CDD:276965 13/39 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1072
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.