DRSC/TRiP Functional Genomics Resources

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Protein Alignment klhl10 and SKIP4

DIOPT Version :9

Sequence 1:NP_001015100.2 Gene:klhl10 / 3354863 FlyBaseID:FBgn0040038 Length:767 Species:Drosophila melanogaster
Sequence 2:NP_001327045.1 Gene:SKIP4 / 825307 AraportID:AT3G61350 Length:358 Species:Arabidopsis thaliana


Alignment Length:242 Identity:66/242 - (27%)
Similarity:101/242 - (41%) Gaps:18/242 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   355 SGGTSKGCIETYDTRADRWVTINAEDPAGPRAYHGTAVLGFKIFSIGGYDGVE-YFNTCRVFDAV 418
            |||.....:..:.:|.. |..||.......|...|.||||.::|.:||...:| ..:....:||.
plant    83 SGGVFLHMLNPFSSRRS-WKRINDYPYIPMREGMGFAVLGKRLFVLGGCGWLEDATDEIYCYDAA 146

  Fly   419 KKKWNEIA-PMHCRRCYVSVTELNGMIYAIGGYD-GHNRLNTVERYNPRTNQWSVIPPMNMQRSD 481
            ...|.::. |:..:|||.:...|:|.|.||||.. ..|...|.:.|:|.|........:|:....
plant   147 MNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWDIYDPLTRTCKSCSDVNIVPEM 211

  Fly   482 ASACTLQERIYATGGFNGQECLDSAEYYDPVTNVWTRIPNMNHRRSG--VSCVAFRNQLYVIGGF 544
            ..:..:..|||..||..|    .|...|...:.:|.|:.  :...||  ...|.....|||:...
plant   212 EDSFVMDGRIYIRGGVGG----SSTAVYSASSGIWERMD--DDMASGWRGPAVVVAGDLYVLDQT 270

  Fly   545 NGTARLSTGERFDPDTQTWHFIREMNH--SRSNFGLEIIDDMIFAIG 589
            .| |:|:   .:..||:.|..|.:::.  .:....|..|.:.||.||
plant   271 FG-AKLT---MWCKDTRMWIHIGKLSQLVMKQPCRLVSIGNSIFVIG 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
klhl10NP_001015100.2 BTB 72..186 CDD:279045
PHA03098 86..610 CDD:222983 66/242 (27%)
BACK 195..298 CDD:285009
Kelch 347..394 CDD:128874 11/38 (29%)
KELCH repeat 385..428 CDD:276965 13/44 (30%)
Kelch 396..442 CDD:128874 12/47 (26%)
Kelch_1 431..476 CDD:279660 15/45 (33%)
KELCH repeat 432..475 CDD:276965 15/43 (35%)
KELCH repeat 479..523 CDD:276965 10/43 (23%)
Kelch 490..536 CDD:128874 13/47 (28%)
Kelch_1 525..570 CDD:279660 13/46 (28%)
KELCH repeat 526..571 CDD:276965 13/46 (28%)
Kelch_1 573..617 CDD:279660 6/17 (35%)
KELCH repeat 573..617 CDD:276965 6/17 (35%)
SKIP4NP_001327045.1 F-box 22..60 CDD:395521
PRK14131 83..>150 CDD:237617 19/67 (28%)
PHA03098 <100..322 CDD:222983 62/224 (28%)
KELCH repeat 112..157 CDD:276965 13/44 (30%)
KELCH repeat 161..212 CDD:276965 16/50 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1072
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.860

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