DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment klhl10 and AFR

DIOPT Version :10

Sequence 1:NP_001015100.2 Gene:klhl10 / 3354863 FlyBaseID:FBgn0040038 Length:767 Species:Drosophila melanogaster
Sequence 2:NP_565572.1 Gene:AFR / 816990 AraportID:AT2G24540 Length:372 Species:Arabidopsis thaliana


Alignment Length:310 Identity:74/310 - (23%)
Similarity:125/310 - (40%) Gaps:58/310 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   344 PHEVIFAIGGWSGGTSKGCIETYDTRADRWVTINAEDPAGPRAY------HGTAVLGF----KIF 398
            |:..:||   ::..|::...::.|..:.||..:    |..|.::      |..:....    |:|
plant    80 PYLFVFA---FNKSTARIQWQSLDLASGRWFVL----PPMPNSFTKISSPHALSCASMPRQGKLF 137

  Fly   399 SIGGYDGVEYFNTCRVFDAVKKKWNEIAPMHCRRCYVSVTELNGMIYAIGGYDGHNRLNT--VER 461
            .:||.|   ...:..|:.|:..:|:.|:||...|.|.....:||.|.|:||..|.|...|  ||.
plant   138 VLGGGD---VNRSAVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGGNGEATTEVES 199

  Fly   462 YNPRTNQWSVIPPMNMQRSDASACTLQERIYATGGF--------NGQECLDSAEYYDPVTNVWTR 518
            |:|..:.|:|:..:.|..:...:..:.:.:..|.|:        .||       .||.....|..
plant   200 YDPDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGQ-------VYDSDEGTWRE 257

  Fly   519 IP-NMNHRRSGVSCVAFRNQLYVI---GGFNGTARLSTGERFDPDTQTWHFIR----EMNHSRSN 575
            :. .|....:||| |..|::|:||   |.|......|       |..||.::.    :....|..
plant   258 MSGGMKEGWTGVS-VVIRDRLFVISEHGDFPMKVYCS-------DDDTWRYVSGEKLQGEKMRRP 314

  Fly   576 FGLEIIDDMIFAIGGFNGVSTISHTECYVAETDEWMEATDMNIVRSALSA 625
            |.:...||.:|.:     .|.|:..|..|:|......:.:..:|.|..|:
plant   315 FAVTGADDRVFVV-----ASGINVAEGRVSEGQNGDFSVEWRMVSSPKSS 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
klhl10NP_001015100.2 BTB_POZ 62..>108 CDD:453885
PHA03098 86..610 CDD:222983 71/293 (24%)
KELCH repeat 385..428 CDD:276965 10/52 (19%)
KELCH repeat 432..475 CDD:276965 17/44 (39%)
KELCH repeat 479..523 CDD:276965 7/52 (13%)
KELCH repeat 526..571 CDD:276965 14/51 (27%)
KELCH repeat 573..617 CDD:276965 10/43 (23%)
AFRNP_565572.1 F-box_AtAFR-like 28..68 CDD:438923
NanM 81..332 CDD:442289 66/280 (24%)
KELCH repeat 168..214 CDD:276965 17/45 (38%)
KELCH repeat 217..259 CDD:276965 7/48 (15%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.