DRSC/TRiP Functional Genomics Resources

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Protein Alignment klhl10 and SKIP6

DIOPT Version :9

Sequence 1:NP_001015100.2 Gene:klhl10 / 3354863 FlyBaseID:FBgn0040038 Length:767 Species:Drosophila melanogaster
Sequence 2:NP_565522.1 Gene:SKIP6 / 816731 AraportID:AT2G21950 Length:372 Species:Arabidopsis thaliana


Alignment Length:354 Identity:77/354 - (21%)
Similarity:120/354 - (33%) Gaps:122/354 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 DRNPESRK--RHVAHLMTGVRLGLM--TPKCFMEEVKEHPYVLECEAAKPLIVDTFKFMYDLDFL 326
            |..||::.  :.:..|...|.|..:  .|:|       |..:|.      |:..||:        
plant     9 DEPPETKSPAQLIPLLSEDVALSCLARVPRC-------HYPILS------LVSKTFR-------- 52

  Fly   327 NPQADELTTPPLAMPRLPHEVIFAIGGWSGGT-------------SKGCIETYDTRADRWVTI-- 376
                 .|.|.||         ::|.....|.|             |..|          |.|:  
plant    53 -----SLPTSPL---------LYATRALVGATENILYVAIRIPPESGAC----------WFTLLH 93

  Fly   377 ----NAED-------PAGP------RAYHGTAVLGFKIFSIGGYDGVEYFNTCRVFDAVKKKWNE 424
                |:.:       |:.|      .||   .|:..:|:.|||.......::..|.|.....|..
plant    94 RTLSNSTNSKMLVPIPSCPSPSLVGSAY---VVVDSEIYVIGGSIRDVPSSSVWVLDCRFHTWRR 155

  Fly   425 IAPMHCRRCYVSVTELNGMIYAIGG--YDGHNR-LNTVERYNPRTNQWSVI--PPMNMQRSDASA 484
            ::.|...|.:.:...::|.||.|||  .|...| :|..|.::.:|..|..:  |.|.::.....|
plant   156 VSNMRVGREFAAAGVIDGKIYVIGGCVVDNWARSINWAEMFDIKTQTWEPVASPGMEVREKWMHA 220

  Fly   485 CTLQE-RIYATGGFNGQECLDSAEYYDPVTNVWTRIPNMNHRR-----SGVSCVAFRNQLY---V 540
            ..:.| ::||....||       ..|:|....|    .|..:|     .|.:|| ..|.||   .
plant   221 SAVMEGKVYAMADRNG-------VVYEPKEKKW----EMPEKRLDLGWRGRACV-IENILYCYDY 273

  Fly   541 IGGFNGTARLSTGERFDPDTQTWHFIREM 569
            :|...|         :||..:.|   ||:
plant   274 LGKIRG---------YDPKERIW---REL 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
klhl10NP_001015100.2 BTB 72..186 CDD:279045
PHA03098 86..610 CDD:222983 77/354 (22%)
BACK 195..298 CDD:285009 8/35 (23%)
Kelch 347..394 CDD:128874 13/78 (17%)
KELCH repeat 385..428 CDD:276965 10/42 (24%)
Kelch 396..442 CDD:128874 9/45 (20%)
Kelch_1 431..476 CDD:279660 14/49 (29%)
KELCH repeat 432..475 CDD:276965 14/47 (30%)
KELCH repeat 479..523 CDD:276965 9/44 (20%)
Kelch 490..536 CDD:128874 12/50 (24%)
Kelch_1 525..570 CDD:279660 14/53 (26%)
KELCH repeat 526..571 CDD:276965 14/52 (27%)
Kelch_1 573..617 CDD:279660
KELCH repeat 573..617 CDD:276965
SKIP6NP_565522.1 F-box 21..64 CDD:279040 15/77 (19%)
Kelch_1 117..160 CDD:279660 10/45 (22%)
KELCH repeat 122..159 CDD:276965 8/36 (22%)
muta_rot_YjhT 153..>352 CDD:274641 41/162 (25%)
KELCH repeat 163..212 CDD:276965 14/48 (29%)
Kelch_1 163..210 CDD:279660 13/46 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1072
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.860

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