DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fign and VPS4

DIOPT Version :10

Sequence 1:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_015499.1 Gene:VPS4 / 856303 SGDID:S000006377 Length:437 Species:Saccharomyces cerevisiae


Alignment Length:464 Identity:150/464 - (32%)
Similarity:236/464 - (50%) Gaps:71/464 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 MASSDLQAPALEVSSTYPVQQAVKSRPEGQFPESRNNSTKKID----AQQYSSESSS----QSGF 153
            |::.|.....:|:     ||:|:......|:.|:.......:|    |.:|.....|    ::.|
Yeast     1 MSTGDFLTKGIEL-----VQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKF 60

  Fly   154 GFRTAREQLIMDELKKKNRQATSEVDAVPTGMMNFRKKTLGGKRTVSSNFVSPVAQNDNSTSSRS 218
            .....|.:.:...|:.:...|..:..:..:|       :.||.:.:|..     ...||...   
Yeast    61 TEYLNRAEQLKKHLESEEANAAKKSPSAGSG-------SNGGNKKISQE-----EGEDNGGE--- 110

  Fly   219 SSIPPALAHLDSKMVDHILGESMHDFKP-VAWEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRCP 282
                      |:|.:...|..::...|| |.|||:||||.||....||:|:|::.|.||.|.|.|
Yeast   111 ----------DNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKP 165

  Fly   283 PRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIF 347
            ..|:||:|||||||:.:||::|::|.:.|||::.|.|.|||:|::|||||.|||:|..::|:|||
Yeast   166 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIF 230

  Fly   348 IDEVDSLLSKRSANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRL 412
            |||||:|...|...|:|::.|:|.|.|:.::| ..|:...|||:||||.|.:||.|:||||.||:
Yeast   231 IDEVDALTGTRGEGESEASRRIKTELLVQMNG-VGNDSQGVLVLGATNIPWQLDSAIRRRFERRI 294

  Fly   413 YVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPL-------- 469
            |:|||...||..:.|..:......|.......|..:|:||||:|:..:.:.|.|.|:        
Yeast   295 YIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 359

  Fly   470 -----------RSLTP------DQMEV----IETHQL--PAVTMDDFKQALRVISKSVSSEDCKQ 511
                       |.|||      ..:|:    ||..:|  |.:|:.||.:|::....:|:.:|..:
Yeast   360 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLK 424

  Fly   512 FEAWNEIYG 520
            .|.:...:|
Yeast   425 QEQFTRDFG 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 93/185 (50%)
AAA_lid_3 444..495 CDD:465537 22/81 (27%)
Vps4_C <480..520 CDD:462762 11/41 (27%)
VPS4NP_015499.1 cell_div_CdvC 17..432 CDD:468935 144/440 (33%)
RecA-like_VPS4 127..296 CDD:410929 90/169 (53%)
Blue background indicates that the domain is not in the aligned region.

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