DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fign and CDC48

DIOPT Version :10

Sequence 1:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_010157.1 Gene:CDC48 / 851431 SGDID:S000002284 Length:835 Species:Saccharomyces cerevisiae


Alignment Length:432 Identity:114/432 - (26%)
Similarity:202/432 - (46%) Gaps:105/432 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 IDAQQYSSESSSQSGFGFRTAREQLIMDELKKK-------NRQATSEV-DAVPTGMMNFRKKTLG 194
            :|.:..::|:....|....:...:..|.::::|       ..:..:|| |::...|.||| ..||
Yeast   404 VDLEALAAETHGYVGADIASLCSEAAMQQIREKMDLIDLDEDEIDAEVLDSLGVTMDNFR-FALG 467

  Fly   195 GKRTVSSNFVSPVAQNDNSTSSRSSSIPPALAHLDSKMVDHILGESMHDFKPVAWEDIAGLESAK 259
                           |.|.::.|.:.:                 ||::    |.|:|:.||:..|
Yeast   468 ---------------NSNPSALRETVV-----------------ESVN----VTWDDVGGLDEIK 496

  Fly   260 STFLEAIIMPLRRPDLFT--GVRCPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSK 322
            ....|.:..|:..||.:|  |: .|.:|||.:|||||||||:||::|::..|.|.|:....|.|.
Yeast   497 EELKETVEYPVLHPDQYTKFGL-SPSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSM 560

  Fly   323 WVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENE---STLRLKNEFLIHLDGAASNE 384
            |.|::|..::.:|..|.|..|.::|:||:||:...|..:..:   ::.|:.|:.|..:||  .|.
Yeast   561 WYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSLGDAGGASDRVVNQLLTEMDG--MNA 623

  Fly   385 EIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVR------- 440
            :..|.||||||||.::|.|:.|  |..:.:|||||...||..|:         |..:|       
Yeast   624 KKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSIL---------NAQLRKTPLEPG 679

  Fly   441 -QVIELAELTDGYSGADVDTLCRYASMAPLRSLTPDQMEVIETHQ-------------------- 484
             ::..:|:.|.|:||||:..:.:.|:...::    |.:|....|:                    
Yeast   680 LELTAIAKATQGFSGADLLYIVQRAAKYAIK----DSIEAHRQHEAEKEVKVEGEDVEMTDEGAK 740

  Fly   485 ---------LPAVTMDDFKQALRVISKSVSSEDCKQFEAWNE 517
                     :|.:|.:.|.:|::...:|||..:.:::||:::
Yeast   741 AEQEPEVDPVPYITKEHFAEAMKTAKRSVSDAELRRYEAYSQ 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 67/191 (35%)
AAA_lid_3 444..495 CDD:465537 14/79 (18%)
Vps4_C <480..520 CDD:462762 10/67 (15%)
CDC48NP_010157.1 CDC48 48..785 CDD:273521 114/432 (26%)
Blue background indicates that the domain is not in the aligned region.

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