Protein Alignment Fign and CDC48C

DIOPT Version :10

• Sequence 1: NP_608763.2
• Gene: Fign / 33544
• FlyBaseID: FBgn0031519
• Length: 523
• Species: Drosophila melanogaster
• Sequence 2: NP_001326134.1
• Gene: CDC48C / 821105
• AraportID: AT3G01610
• Length: 830
• Species: Arabidopsis thaliana
• Alignment Length: 568
• Identity: 140/568 - (24%)
• Similarity: 227/568 - (39%)
• Gaps: 162/568 - (28%)

  Fly    69 AGYLFEMPHNSVFEPECRGFYESCQQTEMASSDLQAPALEVSSTYPVQQAVKSRPEGQFPESRNN 133
            :|.||..|             ..|.:|::|:                  |:.:  |...|..:.:
plant   268 SGILFHGP-------------PGCGKTKLAN------------------AIAN--EAGVPFYKIS 299

  Fly   134 STKKIDAQQYSSESSSQSGF--GFRTAREQLIMDEL-----KKKNRQ------------------ 173
            :|:.|.....:||.:.:..|  .:|||...:.:||:     |::|:|
plant   300 ATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMDGP 364

  Fly   174 --------------------ATSEVDAVP-----TGMMNFRKKTLGGKRTVSSNFVSPVAQ---- 209
                                ||:..||:.     :|................:..:|.|||
plant   365 GNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRL 429

  Fly   210 NDNSTSSRSSSIPPALAHLDSKMVDHILGE----------------------------------- 239
            .......|.:.:.|.....|.:.|.::.|.
plant   430 EGPFDKKRIARLTPGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDGEDDKSWLRMPWPEEELE 494

  Fly   240 ----SMHDFK-------------------PVAWEDIAGLESAKSTFLEAIIMPLRRPDLFT--GV 279
                .|.||:                   .|.|:|:.||:..:..|...|:.|:::||::.  ||
plant   495 KLFVKMSDFEEAVNLVQASLTREGFSIVPDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGV 559

  Fly   280 RCPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPA 344
            .. ..|.||:||||.|||||||:.|::|.|.|..|..:.|.:|:||::|..::|||..|....|.
plant   560 DL-ETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPC 623

  Fly   345 IIFIDEVDSLLSKRSANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--R 407
            :||.||||:|.:.|.........||.|:||:.|||   .|...|.||||||||..:|.|..|  |
plant   624 VIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDG---GERRNVYVIGATNRPDVVDPAFLRPGR 685

  Fly   408 FVRRLYVPLPTREARQKIIEKLIHQ--VKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLR 470
            |...||||||..:.|..|::.:..:  :..::|:..:.:  ...:|:||||:..|.:.|:...:.
plant   686 FGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAK--NNCEGFSGADLAHLVQKATFQAVE 748

  Fly   471 ----SLTPDQMEVIETHQLPAVTMDDFKQALRVISKSVSSEDCKQFEA 514
                |....:.:|.:..|....|. .|:|||.::|.||:.:..:.::|
plant   749 EMIGSSESSEDDVTDITQCTIKTR-HFEQALSLVSPSVNKQQRRHYDA 795

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Fign	NP_608763.2	PH-like	<4..50	CDD:473070
		P-loop containing Nucleoside Triphosphate Hydrolases	229..414	CDD:476819	79/246 (32%)
		AAA_lid_3	444..495	CDD:465537	12/54 (22%)
		Vps4_C	<480..520	CDD:462762	10/35 (29%)
CDC48C	NP_001326134.1	CDC48	<223..808	CDD:273521	140/568 (25%)