DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fign and CDC48

DIOPT Version :10

Sequence 1:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_187595.1 Gene:CDC48 / 820142 AraportID:AT3G09840 Length:809 Species:Arabidopsis thaliana


Alignment Length:399 Identity:107/399 - (26%)
Similarity:192/399 - (48%) Gaps:54/399 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 IDAQQYSSESSSQSGFGFRTAREQLIMDELKKKNRQATSEVDAVPTGMMNFRKKTLGGKRTVSSN 202
            :|.::.|.::....|........:..:..:::|......|.|::...::|               
plant   397 VDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDAEILN--------------- 446

  Fly   203 FVSPVAQNDNSTSSRSSSIPPALAHLDSKMVDHILGESMHDFKPVAWEDIAGLESAKSTFLEAII 267
              |....|::..::..:|.|.||.            |::.:...|:|.||.|||:.|....|.:.
plant   447 --SMAVTNEHFHTALGNSNPSALR------------ETVVEVPNVSWNDIGGLENVKRELQETVQ 497

  Fly   268 MPLRRPDLFT--GVRCPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKL 330
            .|:..|:.|.  |: .|.:|||.:||||.||||:||:||::.:|.|.|:....|.:.|.|::|..
plant   498 YPVEHPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 561

  Fly   331 VKTLFAVAAAHQPAIIFIDEVDSLLSKRSANE----NESTLRLKNEFLIHLDGAASNEEIRVLVI 391
            |:.:|..|....|.::|.||:||:.::|....    ..:..|:.|:.|..:||  .|.:..|.:|
plant   562 VREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDG--MNAKKTVFII 624

  Fly   392 GATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSG 454
            ||||||..:|.|:.|  |..:.:|:|||..::|..|.:..:.:.....|| .:..||:.|.|:||
plant   625 GATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDV-DIGALAKYTQGFSG 688

  Fly   455 ADVDTLCRYASMAPL-------------RSLTPDQMEVIETHQLPAVTMDDFKQALRVISKSVSS 506
            ||:..:|:.|....:             ||..|:.||.....::..:....|:::::...:|||.
plant   689 ADITEICQRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDEVSEIKAAHFEESMKYARRSVSD 753

  Fly   507 EDCKQFEAW 515
            .|.::::|:
plant   754 ADIRKYQAF 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 65/192 (34%)
AAA_lid_3 444..495 CDD:465537 16/63 (25%)
Vps4_C <480..520 CDD:462762 6/36 (17%)
CDC48NP_187595.1 CDC48 29..768 CDD:273521 107/399 (27%)
Blue background indicates that the domain is not in the aligned region.

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