DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fign and SKD1

DIOPT Version :10

Sequence 1:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_180328.1 Gene:SKD1 / 817306 AraportID:AT2G27600 Length:435 Species:Arabidopsis thaliana


Alignment Length:439 Identity:139/439 - (31%)
Similarity:220/439 - (50%) Gaps:61/439 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 STKKIDAQQYSSESSSQSGFGFRTAREQLIMDELK--------KKNRQATSEVDAVPTGMMNFRK 190
            |..|..|.:|..::..:...|.......|.|:.|:        :||.:..   :|:......:.:
plant     3 SNFKEQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYEKNPKIR---EAITQKFTEYLR 64

  Fly   191 KTLGGKRTVSSNFVSPVAQNDNSTSSRSSSIP------------PALAHLDSKMVDHILGESMHD 243
            :....:..:......|.:..|.:.::|..:.|            |..:.|.:.:...|:.|    
plant    65 RAEEIRAVLDEGGSGPGSNGDAAVATRPKTKPKDGEGGGKDGEDPEQSKLRAGLNSAIVRE---- 125

  Fly   244 FKP-VAWEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRCPPRGVLLFGPPGTGKTLIAKSIASQA 307
             || :.|.|:|||||||....||:|:|::.|..|||.|.|.|..||:|||||||:.:||::|::|
plant   126 -KPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEA 189

  Fly   308 KAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR-SANENESTLRLKN 371
            .:.|||::.|.|.|||:|::||||..||.:|....|:|||:||:|||...| ..||:|::.|:|.
plant   190 DSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIKT 254

  Fly   372 EFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKIIEKLIHQVKHN 436
            |.|:.:.|...|:| :|||:.|||.|..||:|:||||.:|:|:|||..:|||.:.:..:....||
plant   255 ELLVQMQGVGHNDE-KVLVLAATNTPYALDQAIRRRFDKRIYIPLPEAKARQHMFKVHLGDTPHN 318

  Fly   437 LDVRQVIELAELTDGYSGADVDTLCRYASMAPLRSL--------TPD----------------QM 477
            |.......|.:.|:|:||:||....:.....|:|..        :||                .|
plant   319 LTEPDFEYLGQKTEGFSGSDVSVCVKDVLFEPVRKTQDAMFFFKSPDGTWMPCGPRHPGAIQTTM 383

  Fly   478 EVIETHQL------PAVTMDDFKQALRVISKSVSSEDCKQFEAWNEIYG 520
            :.:.|..|      |.:|..||::.|.....:||..|....|.:.:.:|
plant   384 QDLATKGLAEKIIPPPITRTDFEKVLARQRPTVSKSDLDVHERFTQEFG 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 88/186 (47%)
AAA_lid_3 444..495 CDD:465537 18/80 (23%)
Vps4_C <480..520 CDD:462762 11/45 (24%)
SKD1NP_180328.1 cell_div_CdvC 7..431 CDD:468935 136/432 (31%)
RecA-like_VPS4 126..296 CDD:410929 86/170 (51%)
Blue background indicates that the domain is not in the aligned region.

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