Protein Alignment Fign and nmd

DIOPT Version :9

• Sequence 1: NP_001259995.1
• Gene: Fign / 33544
• FlyBaseID: FBgn0031519
• Length: 523
• Species: Drosophila melanogaster
• Sequence 2: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Alignment Length: 395
• Identity: 124/395 - (31%)
• Similarity: 200/395 - (50%)
• Gaps: 84/395 - (21%)

  Fly   107 LEVSS--TYPVQQAVKSRPEGQFPESRNNSTKKIDAQQYSSESSSQSGFGFRTAREQLIMDELKK 169
            |.|:|  ||   .:||.......|.|:|....|:.|::.....:.|.||               |
  Fly    23 LSVASLITY---YSVKWMMNQMDPTSKNKKKAKVLAEEQLKRLAEQEGF---------------K 69

  Fly   170 KNRQATSEVDAVPTGMMNFRKKTLGGKRTVSSNFVSPVAQNDNSTSSRSSSIPPALAHLDSKMVD 234
            ...|..|:.:.:                 ::|:.|.|.
  Fly    70 LRGQEFSDYELM-----------------IASHLVVPA--------------------------- 90

  Fly   235 HILGESMHDFKPVAWEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRC--PPRGVLLFGPPGTGKT 297
                    |. .|:|.|||||:|......|::::|::..|||...:.  .|:||||.||||.|||
  Fly    91 --------DI-TVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKT 146

  Fly   298 LIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANE 362
            ||||:.|.:|..:|.:::.:.||.||.|:::||...:|::|:..:|.||||||:||.|..|:.|:
  Fly   147 LIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMND 211

  Fly   363 NESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKIIE 427
            :|:|..:|.:|::..||.::|....|:|:|||||||:||:|:.||...:.::.||: |.::|.|.
  Fly   212 HEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPS-ETQRKDIL 275

  Fly   428 KLI---HQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLRSL--TPDQMEVIETHQLPA 487
            |||   .:|..::|:.:   |::||:|:||:|:..:||.||:..:|.|  :.|............
  Fly   276 KLILQSEEVSQDVDLNR---LSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVR 337

  Fly   488 VTMDD 492
            :||||
  Fly   338 ITMDD 342

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Fign	NP_001259995.1	AAA	282..418	CDD:214640	62/135 (46%)
		AAA	286..416	CDD:278434	59/129 (46%)
		Vps4_C	<480..520	CDD:286426	4/13 (31%)
nmd	NP_001285801.1	AAA	132..266	CDD:214640	61/133 (46%)
		AAA	135..265	CDD:278434	59/129 (46%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45467072
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.740