DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fign and Afg2a

DIOPT Version :10

Sequence 1:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_001402011.1 Gene:Afg2a / 361935 RGDID:1310478 Length:893 Species:Rattus norvegicus


Alignment Length:453 Identity:141/453 - (31%)
Similarity:219/453 - (48%) Gaps:59/453 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 QQTEMASSDLQAPALEVSSTYPVQQAVKSRPEGQFPESRNNSTKKIDAQQYSS--------ESSS 149
            :|:.|.|||       |..::.:.|.....|  |.|.|::...|.|:.:..:.        ..|.
  Rat   219 EQSSMESSD-------VDISFQLSQLDLKEP--QSPASQSTPCKPINDRTMNKAGEVLLDVTQSP 274

  Fly   150 QSGFGFRTAREQLI-----MDELKKKNRQATSEVDAVPTGMMNFRKKTLGGKRTVSSNFVSPVAQ 209
            :.|.|.  ..|::.     .|..|:.|.|..||...:        |.|..|            |:
  Rat   275 RDGSGL--GLEEITGLKCSFDSSKEGNTQPISEEKLL--------KSTSAG------------AK 317

  Fly   210 NDNSTSSRSSSIPPALAHLDSKMVDHILGESMHDFKPVAWEDIAGLESAKSTFLEAIIMPLRRPD 274
            |:..|....||    ...::.:.:.....|....|| |.::.|.||.|......|.|.:||::|:
  Rat   318 NNTDTFYFISS----TTRINLRKICTNSKEQDSQFK-VTYDMIGGLNSQLKAIREIIELPLKQPE 377

  Fly   275 LFTGVRCP-PRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVA 338
            ||.....| |||:||:||||||||:||:::|::..|....||...:.||:.|:.|..::.:||.|
  Rat   378 LFKSYGIPAPRGLLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEA 442

  Fly   339 AAHQPAIIFIDEVDSLLSKRSANENESTLRLKNEFLIHLDGAAS-NEEIRVLVIGATNRPQELDE 402
            ....|:||||||:|:|..||...::|...|:....|..:||..| ..|.||||:|||||||.||.
  Rat   443 TLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDA 507

  Fly   403 AVRR--RFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYAS 465
            |:||  ||.:.:.:.:|..:.|..|::||:.:|.|.|...:::.||....||.|||:..||..|.
  Rat   508 ALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAG 572

  Fly   466 MAPLRSLTPDQMEVIETH--QLPAVTMDDFKQALRVISKSVSSE---DCKQFEAWNEIYGVRH 523
            :..||.:...|..:.::.  .:..:|::||.|.:..|..|...|   |.... :|::|.|:.:
  Rat   573 LYALRRVLRKQPNLPDSKVAGMVKITLNDFLQGMNDIRPSAMREVAIDVPNV-SWSDIGGLEN 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 78/188 (41%)
AAA_lid_3 444..495 CDD:465537 16/52 (31%)
Vps4_C <480..520 CDD:462762 10/44 (23%)
Afg2aNP_001402011.1 CDC48_N 64..132 CDD:451359
CDC48 <323..889 CDD:273521 112/318 (35%)
Blue background indicates that the domain is not in the aligned region.

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