DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fign and Vps4b

DIOPT Version :10

Sequence 1:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_001020887.1 Gene:Vps4b / 360834 RGDID:1305969 Length:444 Species:Rattus norvegicus


Alignment Length:423 Identity:143/423 - (33%)
Similarity:219/423 - (51%) Gaps:66/423 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 KIDAQQYSSESSSQSGFGFRTAREQLIMDELKKKNRQATSEVDAVPTGMMNFRKKTLGGKRTVSS 201
            |.:||...::.|.::.......|.:.:.:.||||.::....:....:|                 
  Rat    46 KYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPMKEEQSG----------------- 93

  Fly   202 NFVSPVAQNDNSTSSRSSSIPPALAHLDSKMVDHILGESMHDFKP-VAWEDIAGLESAKSTFLEA 265
                ||.:..|.:...:.|..|....|.:::...|:.|     :| |.|.|:||||.||....||
  Rat    94 ----PVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIE-----RPNVKWSDVAGLEGAKEALKEA 149

  Fly   266 IIMPLRRPDLFTGVRCPPRGVLLFGPPGTGKTLIAKSIASQA-KAKFFSINPSSLTSKWVGDAEK 329
            :|:|::.|.||||.|.|.||:||||||||||:.:||::|::| .:.||||:.|.|.|||:|::||
  Rat   150 VILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEK 214

  Fly   330 LVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENESTLRLKNEFLIHLDGAASNEEIRVLVIGAT 394
            |||.||.:|..::|:||||||:|||...||.||:|:..|:|.|||:.:.|...:.: .:||:|||
  Rat   215 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND-GILVLGAT 278

  Fly   395 NRPQELDEAVRRRFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDT 459
            |.|..||.|:||||.:|:|:|||...||..:....:...:::|......||...||||||||:..
  Rat   279 NIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI 343

  Fly   460 LCRYASMAPLRSL----------------------------TPDQMEVIETHQL---------PA 487
            :.|.|.|.|:|.:                            :|.....||...:         |.
  Rat   344 IVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPV 408

  Fly   488 VTMDDFKQALRVISKSVSSEDCKQFEAWNEIYG 520
            |:|.|..::|.....:|:.:|..:.:.:.|.:|
  Rat   409 VSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFG 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 93/186 (50%)
AAA_lid_3 444..495 CDD:465537 22/87 (25%)
Vps4_C <480..520 CDD:462762 10/48 (21%)
Vps4bNP_001020887.1 MIT_VPS4 7..69 CDD:239141 4/22 (18%)
RecA-like_VPS4 128..298 CDD:410929 91/170 (54%)
AAA_lid_3 325..366 CDD:465537 15/40 (38%)
Vps4_C 381..441 CDD:462762 11/59 (19%)
Blue background indicates that the domain is not in the aligned region.

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