DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fign and Vps4

DIOPT Version :10

Sequence 1:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster


Alignment Length:404 Identity:145/404 - (35%)
Similarity:221/404 - (54%) Gaps:53/404 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 AREQLIMDELKKKNRQATSEVDAVPTGMMNFRKKTL--GGKRTVSSNFVSPVAQNDNSTSSRSSS 220
            |:.:...|.::.|..|.....:.:...:...:||.:  ||:.:...:      ::..|.|.....
  Fly    48 AQGEKAKDSIRAKCLQYLDRAEKLKEYLKKGKKKPIKEGGESSAKDD------KDKKSDSDDEDG 106

  Fly   221 IPPALAHLDSKMVDHILGESMHDFKP-VAWEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRCPPR 284
            ..|....|.||:.|.|:.|     || |.|.|:|||::||....||:|:|::.|.||||.|.|.:
  Fly   107 DDPEKKKLQSKLEDAIVIE-----KPKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWK 166

  Fly   285 GVLLFGPPGTGKTLIAKSIASQA-KAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFI 348
            |:||||||||||:.:||::|::| ::.|||::.|.|.|||:|::|||||.||.:|..|:|:||||
  Fly   167 GILLFGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFI 231

  Fly   349 DEVDSLLSKRSANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLY 413
            ||:||:.|.||.|||:|..|:|.|||:.:.| ..|:...:||:||||.|..||.|:||||.:|:|
  Fly   232 DEIDSMCSARSDNENDSVRRIKTEFLVQMQG-VGNDTDGILVLGATNIPWVLDSAIRRRFEKRIY 295

  Fly   414 VPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLRSL------ 472
            :|||...||..:.:..:....|.|..:.:.|||..|:||||||:..:.|.|.|.|:|.:      
  Fly   296 IPLPEAHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADISIVVRDALMEPVRKVQTATHF 360

  Fly   473 ----------------------TPDQMEVIETHQL---------PAVTMDDFKQALRVISKSVSS 506
                                  :|.....:|.:.:         |.|||.|..::|.....:|:.
  Fly   361 KRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNE 425

  Fly   507 EDCKQFEAWNEIYG 520
            :|.|:...:.|.:|
  Fly   426 DDLKKLRKFTEDFG 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 97/186 (52%)
AAA_lid_3 444..495 CDD:465537 22/87 (25%)
Vps4_C <480..520 CDD:462762 11/48 (23%)
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141 4/20 (20%)
RecA-like_VPS4 126..296 CDD:410929 92/170 (54%)
AAA_lid_3 323..361 CDD:465537 15/37 (41%)
Vps4_C 379..439 CDD:462762 12/59 (20%)
Blue background indicates that the domain is not in the aligned region.

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