DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fign and vcp

DIOPT Version :10

Sequence 1:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_958889.1 Gene:vcp / 327197 ZFINID:ZDB-GENE-030131-5408 Length:806 Species:Danio rerio


Alignment Length:396 Identity:117/396 - (29%)
Similarity:194/396 - (48%) Gaps:53/396 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 IDAQQYSSESSSQSGFGFRTAREQLIMDELKKKNRQATSEVDAVPTGMMNFRKKTLGGKRTVSSN 202
            :|.:|.::|:....|........:..:..::||......|.:.:...:||....|:         
Zfish   394 VDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTM--------- 449

  Fly   203 FVSPVAQNDNSTSSRSSSIPPALAHLDSKMVDHILGESMHDFKPVAWEDIAGLESAKSTFLEAII 267
                    |:...:.|.|.|.||.            |::.:...:.||||.||:..|....|.:.
Zfish   450 --------DDFRWALSQSNPSALR------------ETVVEVPNITWEDIGGLDDVKRELQELVQ 494

  Fly   268 MPLRRPDLFT--GVRCPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKL 330
            .|:..||.|.  |: .|.:|||.:||||.||||:||:||::.:|.|.||....|.:.|.|::|..
Zfish   495 YPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEAN 558

  Fly   331 VKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENE---STLRLKNEFLIHLDGAASNEEIRVLVIG 392
            |:.:|..|....|.::|.||:||:...|..|..:   :..|:.|:.|..:||.:|.:  .|.:||
Zfish   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRVINQILTEMDGMSSKK--NVFIIG 621

  Fly   393 ATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGA 455
            |||||..:|.|:.|  |..:.:|:|||..::|..|::..:.:...:.|| .:..||::|:|:|||
Zfish   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPISKDV-DLDFLAKMTNGFSGA 685

  Fly   456 DVDTLCRYASMAPL-------------RSLTPDQMEVIETHQLPAVTMDDFKQALRVISKSVSSE 507
            |:..:|:.|....:             |...|..|||.|...:|.:..|.|::|:|...:|||..
Zfish   686 DLTEICQRACKLAIRESIENEIRRERERQTNPSAMEVEEDDPVPEIRKDHFEEAMRFARRSVSDN 750

  Fly   508 DCKQFE 513
            |.:::|
Zfish   751 DIRKYE 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 67/191 (35%)
AAA_lid_3 444..495 CDD:465537 19/63 (30%)
Vps4_C <480..520 CDD:462762 11/34 (32%)
vcpNP_958889.1 CDC48 25..764 CDD:273521 117/396 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 708..727 6/18 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 768..806
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.