DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fign and Vps4a

DIOPT Version :10

Sequence 1:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster
Sequence 2:XP_006255622.3 Gene:Vps4a / 246772 RGDID:628810 Length:520 Species:Rattus norvegicus


Alignment Length:407 Identity:147/407 - (36%)
Similarity:223/407 - (54%) Gaps:25/407 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 QTEMASSDLQA---PALEVSSTYPVQQAVKSRPEGQFPESRNNSTKKIDAQQYSSESSSQSGFGF 155
            :||.|||....   |..|: :|..:|:|:....:....:...|..:.:...|::.|      :..
  Rat    56 RTEAASSTAGCGADPGYEM-TTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVE------YFL 113

  Fly   156 RTAREQLIMDELKKKNR-QATSEVDAVPTGMMNFRKKTLGGKRTVSSNFVSPVAQNDNSTSSRSS 219
            ...:.:...|:.|:..| :....:|.........|.|...||:.|..|    .::...|.|....
  Rat   114 HAIKYEAHSDKAKESIRAKCMQYLDRAEKLKDYLRNKEKHGKKPVKEN----QSEGKGSDSDSEG 174

  Fly   220 SIPPALAHLDSKMVDHILGESMHDFKPVAWEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRCPPR 284
            ..|.     ..|:.:.::|..:.:...:.|.|:||||.||....||:|:|::.|.||||.|.|.|
  Rat   175 DNPE-----KKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR 234

  Fly   285 GVLLFGPPGTGKTLIAKSIASQA-KAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFI 348
            |:||||||||||:.:||::|::| .:.|||::.|.|.|||:|::|||||.||.:|..|:|:||||
  Rat   235 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFI 299

  Fly   349 DEVDSLLSKRSANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLY 413
            ||||||...|:.||:|:..|:|.|||:.:.|..:|.: ..||:||||.|..||.|:||||.:|:|
  Rat   300 DEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNND-GTLVLGATNIPWVLDSAIRRRFEKRIY 363

  Fly   414 VPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLR---SLTPD 475
            :|||...||.::....:....|||....:.|||..|:||||||:..:.|.:.|.|:|   |.|..
  Rat   364 IPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHF 428

  Fly   476 QMEVIETHQLPAVTMDD 492
            :.....:...|:|.:||
  Rat   429 KKVCGPSRTNPSVMIDD 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 92/185 (50%)
AAA_lid_3 444..495 CDD:465537 20/52 (38%)
Vps4_C <480..520 CDD:462762 4/13 (31%)
Vps4aXP_006255622.3 None
Blue background indicates that the domain is not in the aligned region.

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