DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fign and cdc-48.2

DIOPT Version :10

Sequence 1:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_495705.1 Gene:cdc-48.2 / 174309 WormBaseID:WBGene00008053 Length:810 Species:Caenorhabditis elegans


Alignment Length:422 Identity:123/422 - (29%)
Similarity:208/422 - (49%) Gaps:76/422 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 EQLIMDELKKKN-RQATSEVDAVPTGMMNFRKK--------TLGG---------KRTVSSNFVSP 206
            :::.|:::.:.| |....:|.::.:..:.:.|:        |:.|         .|...::...|
 Worm    86 DKIKMNKVVRNNLRSRLGDVVSISSAQLEYGKRVHVLPIDDTIEGLTGNLFDVFLRPYFTDAYRP 150

  Fly   207 VAQNDNSTSSRSSSIPPALAHLDSKMVD---------------HILG------ESMHDFKPVAWE 250
            |.:.|..|      :..|:..::.|:|:               |..|      |.......|.::
 Worm   151 VHKGDIFT------VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYD 209

  Fly   251 DIAGLESAKSTFLEAIIMPLRRPDLF--TGVRCPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFS 313
            |:.|:....:...|.:.:|||.|.||  .||: ||||:||||||||||||||:::|::..|.||.
 Worm   210 DLGGVRKQLAQIKEMVELPLRHPQLFKAIGVK-PPRGILLFGPPGTGKTLIARAVANETGAFFFL 273

  Fly   314 INPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENESTLRLKNEFLIHLD 378
            ||...:.||..|::|..::..||....:.|||:||||:|::..||.....|...|:.::.|..:|
 Worm   274 INGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAIAPKREKAHGEVEKRIVSQLLTLMD 338

  Fly   379 GAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIH----QVKHNL 437
            |..:  ...|:||.|||||..:|.|:||  ||.|.:.:.:|....|.:|:.  ||    ::..::
 Worm   339 GLKT--RAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILR--IHTKNMKLGEDV 399

  Fly   438 DVRQVIELAELTDGYSGADVDTLCRYASMAPLRSLTPDQMEVI---------ETHQLPAVTMDDF 493
            |:.||   |....|:.|||:.:||..|::..:|    ::||:|         |.....||||::|
 Worm   400 DLEQV---ANECHGFVGADLASLCSEAAIQQIR----EKMELIDLEDDTIDAEVLNSLAVTMENF 457

  Fly   494 KQALRVISKSVSSEDCKQF--EAWNEIYGVRH 523
            :.|:...|.|...|...:.  ..|::|.|:::
 Worm   458 RFAMGKSSPSALREAVVETPNTTWSDIGGLQN 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 77/209 (37%)
AAA_lid_3 444..495 CDD:465537 18/59 (31%)
Vps4_C <480..520 CDD:462762 13/50 (26%)
cdc-48.2NP_495705.1 CDC48 44..773 CDD:273521 123/422 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.