DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3277 and Ret

DIOPT Version :9

Sequence 1:NP_608762.3 Gene:CG3277 / 33543 FlyBaseID:FBgn0031518 Length:789 Species:Drosophila melanogaster
Sequence 2:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster


Alignment Length:699 Identity:190/699 - (27%)
Similarity:281/699 - (40%) Gaps:216/699 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 QVRWQDNLPQGTSYNVLVSAVNNSR-CPDAPCSEYGIKEKNASA---ETHSVNLPVNPNLNVESV 160
            |.|..::...||.|.   |.|..|| |||..|..  ::|.|..|   :.......|.|:.:.|: 
  Fly   559 QWRGSNSAMFGTRYG---SCVPESRYCPDHVCDP--LEELNPMACPQDCTPAGRIVGPHSSNEN- 617

  Fly   161 DCNYMFGCQYQVIVETSNAMVRRSARVYIPQCL---EGKCSCQLAPTPPKVLAVAKMLSNETISI 222
                                 :|........|:   .|||||......||:....|. .|||   
  Fly   618 ---------------------KRGIYSASGTCICEDNGKCSCAPLDEEPKMKKPRKR-KNET--- 657

  Fly   223 NLSILASELLRKEQDSHLHETLRTYKMQLKINEETNPSLPWGGVLKHLMTRVYKLSELNFRATP- 286
                                             |..|.|   ||.               |.|| 
  Fly   658 ---------------------------------EAEPLL---GVR---------------RGTPP 671

  Fly   287 -KGFEGVMKLGLGTQLKEKASLSLQAVIIDPTGCEGPRSVTKVPVPANPVLLTEGDSVSNSIIVM 350
             :..:..|.||                :::..|.|..||.                    ...|:
  Fly   672 NQPLQDPMLLG----------------VLNVAGFECDRSC--------------------MFFVI 700

  Fly   351 SAMLIAIILAGLIMLLLRRRRARTTAKLRKQEQIYIQTFATSAIEMEDNVNYVDKYVEKSQVLGL 415
            :..|:.::|  |:.||:.:|: ....:|.||.   :.|.:..|:......::....::.......
  Fly   701 TCPLLFVLL--LLCLLIAQRK-MLQRRLGKQS---MTTSSKQALPESGGGDFALMPLQSGFRFES 759

  Fly   416 ADI-FEVPHSAIQIGRMLGEGAFGQVHEATAINLRRMRGTTIVAVKQLKPNPKADEVAEYLAEIE 479
            .|. :|.|...:|:..:||||.||||.:..|..:..:.|.|.||||.||....:.|....|:|.:
  Fly   760 GDAKWEFPREKLQLDTVLGEGEFGQVLKGFATEIAGLPGITTVAVKMLKKGSNSVEYMALLSEFQ 824

  Fly   480 MLKGVGTHHNVVSFLGCCTIKPPYLMIMEYVNKGNLLSYLRTVRKEASKLRNRNANYTSCRPIMT 544
            :|:.| :|.||:..||.||.....|:|:||...|:|.||||..||                    
  Fly   825 LLQEV-SHPNVIKLLGACTSSEAPLLIIEYARYGSLRSYLRLSRK-------------------- 868

  Fly   545 RTNSTSSPKSQSVNYIELKASSQTIEMPQEDSTAHMNGIRQPHPSFAETTYTIVEDEDAFEYILD 609
                                    ||....|              ||          |..|.: :
  Fly   869 ------------------------IECAGVD--------------FA----------DGVEPV-N 884

  Fly   610 NKELHNFALQIANGMRFLEEQEITHRDLAARNVLIDSNKTLKISDFGLSRHGIYTN----TRTR- 669
            .|.:..||.||..||.:|.|.::.||||||||||:...|..|||||||:| .:|.:    .|:| 
  Fly   885 VKMVLTFAWQICKGMAYLSELKLVHRDLAARNVLLADGKICKISDFGLTR-DVYEDDAYLKRSRD 948

  Fly   670 KLPLRWLSIEAIRENVYSSKSDIWAYGVVLWEIGTLGASPYPTISNDELIPFLMAGNRLERPEIC 734
            ::|::|::.|::.::||:||||:|::||:.||:.||||||||.|:...|...|..|.|::|||.|
  Fly   949 RVPVKWMAPESLADHVYTSKSDVWSFGVLCWELITLGASPYPGIAPQNLWSLLKTGYRMDRPENC 1013

  Fly   735 TPQVYTIMLQCWLEEPEERPTFDAL----YKVLSPKTTYVDI--NSLSD 777
            :..||:|:..||.:||..||:|..|    .|:|.....|:|:  |::|:
  Fly  1014 SEAVYSIVRTCWADEPNGRPSFKFLASEFEKLLGNNAKYIDLETNAVSN 1062

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3277NP_608762.3 STYKc 426..763 CDD:214568 123/345 (36%)
PTKc 430..763 CDD:270623 122/341 (36%)
RetNP_477044.1 PKc_like 770..1049 CDD:304357 124/349 (36%)
TyrKc 771..1042 CDD:197581 122/341 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45455295
Domainoid 1 1.000 165 1.000 Domainoid score I1208
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24416
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

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