DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3277 and Kdr

DIOPT Version :9

Sequence 1:NP_608762.3 Gene:CG3277 / 33543 FlyBaseID:FBgn0031518 Length:789 Species:Drosophila melanogaster
Sequence 2:NP_037194.2 Gene:Kdr / 25589 RGDID:2965 Length:1343 Species:Rattus norvegicus


Alignment Length:892 Identity:226/892 - (25%)
Similarity:364/892 - (40%) Gaps:224/892 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 TNPTLISLVRSSEKEPEQMESHRYVTGLSEPIAMEPLTRM---RLNPNPD-GEI----------- 82
            :|.|:|.....:..|..:.::..|...|:.||:||..:.|   .:|..|. ||.           
  Rat   373 SNYTMIVGDELTIMEVSERDAGNYTVILTNPISMEKQSHMVSLVVNVPPQIGEKALISPMDSYQY 437

  Fly    83 -TELTTNVTLYMEKIPRLQVRWQDNLPQGTSYNVLVSAVNNSRCPDAPCSEY-GIKE-------- 137
             |..|...|:|... |...::|...|.:..||       ..|:.....|.|: .:|:        
  Rat   438 GTMQTLTCTVYANP-PLHHIQWYWQLEEACSY-------RPSQTNPYTCKEWRHVKDFQGGNKIE 494

  Fly   138 --KNASAETHSVNLPVNPNLNVESVDCNYMFGCQYQVIVETSNAMVRRSARVYIPQCLEGKCSCQ 200
              ||..|.....|..|: .|.:::.:.:.::.|      |..| ...|..||.....:.|     
  Rat   495 VTKNQYALIEGKNKTVS-TLVIQAANVSALYKC------EAIN-KAGRGERVISFHVIRG----- 546

  Fly   201 LAPTPPKVLAVAKMLSNETISINLSILASELLRKEQDSHLHETLRTYKM-----QLKINEETNPS 260
                 |::.........|..|::|...|        |.:..|.|..||:     .:.:.|...| 
  Rat   547 -----PEITVQPATQPTEQESVSLLCTA--------DRNTFENLTWYKLGSQATSVHMGESLTP- 597

  Fly   261 LPWGGVLKHLMTRVYKLSELNFRATPK-----GFEGVMKLGLGT--------QLKEKASLSLQAV 312
                 |.|:| ..::||:...|..:..     .|:.......|.        :.|::..|..|.|
  Rat   598 -----VCKNL-DALWKLNGTVFSNSTNDILIVAFQNASLQDQGNYVCSAQDKKTKKRHCLVKQLV 656

  Fly   313 IID-------------------------PTG------------------------CEGPRSVTKV 328
            |::                         ||.                        .:|.|::|..
  Rat   657 ILERMAPMITGNLENQTTTIGETIEVVCPTSGNPTPLITWFKDNETLVEDSGIVLKDGNRNLTIR 721

  Fly   329 PV-------------------PANPVLLTEGDSVSNS---IIVMSAMLIAIILAGLIMLLLRRRR 371
            .|                   .|..:.:.||.....:   ||::...:||:....|::::||..:
  Rat   722 RVRKEDGGLYTCQACNVLGCARAETLFIIEGAQEKTNLEVIILVGTAVIAMFFWLLLVIVLRTVK 786

  Fly   372 ARTTAKLRKQEQIYIQTFATSAIEMEDNVNYVDKYVEKSQVLGLADIFEVPHSAIQIGRMLGEGA 436
            .....:|:..   |:      :|.|:.:...:|:..|:...  .|..:|.|...:::|:.||.||
  Rat   787 RANEGELKTG---YL------SIVMDPDELPLDERCERLPY--DASKWEFPRDRLKLGKPLGRGA 840

  Fly   437 FGQVHEATAINLRRMRGTTIVAVKQLKPNPKADEVAEYLAEIEMLKGVGTHHNVVSFLGCCTIKP 501
            ||||.||.|..:.:......||||.||......|....::|:::|..:|.|.|||:.||.|| ||
  Rat   841 FGQVIEADAFGIDKTATCKTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT-KP 904

  Fly   502 --PYLMIMEYVNKGNLLSYLRTVRKEASKLRNRNANYTSCR--------PIMTRTNS-TSSPKSQ 555
              |.::|:|:...|||.:|||..|.|....:::.|.:.|.:        .:..|.:| |||..|.
  Rat   905 GGPLMVIVEFCKFGNLSTYLRGKRNEFVPYKSKGARFRSGKDYVGELSVDLKRRLDSITSSQSSA 969

  Fly   556 SVNYIELKASSQTIEMPQEDSTAHMNGIRQPHPSFAETTYTIVEDEDAFEYI----LDNKELHNF 616
            |..::|.|:.|.                              ||:|:|.|.:    |..:.|..:
  Rat   970 SSGFVEEKSLSD------------------------------VEEEEASEELYKDFLTLEHLICY 1004

  Fly   617 ALQIANGMRFLEEQEITHRDLAARNVLIDSNKTLKISDFGLSR----HGIYTNTRTRKLPLRWLS 677
            :.|:|.||.||..::..||||||||:|:.....:||.||||:|    ...|......:|||:|::
  Rat  1005 SFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA 1069

  Fly   678 IEAIRENVYSSKSDIWAYGVVLWEIGTLGASPYPTIS-NDELIPFLMAGNRLERPEICTPQVYTI 741
            .|.|.:.||:.:||:|::||:||||.:|||||||.:. ::|....|..|.|:..|:..||::|..
  Rat  1070 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQT 1134

  Fly   742 MLQCWLEEPEERPTFDALYKVLSPKTTYVDINSLSD--DYVFPPISE 786
            ||.||.|:|.:||.|..|.:.|.   ..:..|:..|  ||:..|:||
  Rat  1135 MLDCWHEDPNQRPAFSELVEHLG---NLLQANAQQDGKDYIVLPMSE 1178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3277NP_608762.3 STYKc 426..763 CDD:214568 127/356 (36%)
PTKc 430..763 CDD:270623 126/352 (36%)
KdrNP_037194.2 Ig 224..325 CDD:416386
Ig strand A 224..228 CDD:409353
Ig strand A' 234..238 CDD:409353
Ig strand B 240..249 CDD:409353
Ig strand C 256..261 CDD:409353
Ig strand C' 264..266 CDD:409353
Ig strand D 270..278 CDD:409353
Ig strand E 286..294 CDD:409353
Ig strand F 304..310 CDD:409353
Ig strand G 315..321 CDD:409353
Ig 329..417 CDD:416386 11/43 (26%)
Ig strand A 329..332 CDD:409353
Ig strand A' 339..343 CDD:409353
Ig strand B 345..356 CDD:409353
Ig strand C 360..366 CDD:409353
Ig strand C' 368..371 CDD:409353
Ig strand D 376..379 CDD:409353 1/2 (50%)
Ig strand E 381..386 CDD:409353 0/4 (0%)
Ig strand F 394..402 CDD:409353 2/7 (29%)
Ig strand G 408..417 CDD:409353 1/8 (13%)
Ig_3 547..641 CDD:404760 20/108 (19%)
IGc2 676..740 CDD:197706 6/63 (10%)
Ig strand B 680..684 CDD:409353 0/3 (0%)
Ig strand C 693..697 CDD:409353 0/3 (0%)
Ig strand E 716..720 CDD:409353 1/3 (33%)
Ig strand F 730..735 CDD:409353 0/4 (0%)
VEGFR-2_TMD 755..789 CDD:375470 7/33 (21%)
PTKc_VEGFR2 822..1163 CDD:270681 130/374 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1267..1314
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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