DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9664 and ABCG4

DIOPT Version :9

Sequence 1:NP_722889.1 Gene:CG9664 / 33540 FlyBaseID:FBgn0031515 Length:609 Species:Drosophila melanogaster
Sequence 2:NP_194305.1 Gene:ABCG4 / 828680 AraportID:AT4G25750 Length:577 Species:Arabidopsis thaliana


Alignment Length:608 Identity:161/608 - (26%)
Similarity:276/608 - (45%) Gaps:61/608 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 AQPNGLGPQKQKALELHFSQVSYSLKGATKGSTPIINEACGVFKSGRLTAILGPSGAGKSTLLNA 72
            |:|  |.|     |.|...|.|:.|:..|..|.|           .::.||:|||||||||||:.
plant    14 AKP--LSP-----LLLTAEQPSFILRNITLTSHP-----------SQILAIIGPSGAGKSTLLDI 60

  Fly    73 LAGFKLQGVTGQFLLNGRPRDIMSFRKMSAYIAQNFVMLNLLTVEETLRVSTDLKMPSSTAAQEK 137
            ||. :....:|..|||....:..|:||:|:|:.|:.....||||.||...|..|.:|.:.:  :.
plant    61 LAA-RTSPTSGSILLNSVLINPSSYRKISSYVPQHDTFFPLLTVSETFTFSASLLLPKNLS--KV 122

  Fly   138 QKIIDDIIDILQLQSCRRT-LVKNLSGGEHKRLSIGIELVTNPPIMFFDEPTSGLDCVGSYQVIC 201
            ..::..::..|.|.....| |.:.|||||.:|:|||:.|:.:|.::..||||||||...::.|:.
plant   123 SSVVASLLKELNLTHLAHTRLGQGLSGGERRRVSIGLSLLHDPEVLLLDEPTSGLDSKSAFDVVQ 187

  Fly   202 HLQRLAHD-GRIVVCVVHQPGSRLFQLFDDVLVLAHGEVLYAGEQREMLPTFAQS-GHICPQYYN 264
            .|:.:|.. .|||:..:|||..::..|.|.||:|:.|.::|.| :.::|..|..| |...|...|
plant   188 ILKSIATSRERIVILSIHQPSFKILSLIDRVLLLSKGTIVYHG-RLDLLEAFLLSKGFTVPSQLN 251

  Fly   265 PADFALEVCSQSSTTERCESLITQNKMMHSTASNVVKLQVDEETALIDVHKDALDLSHLRGKEQV 329
            ..::|:|:...........::...:....|...|..:..|..:::.|                  
plant   252 SLEYAMEILQNIRDPYENANIALPDHCPESKKQNQKQSIVRYKSSRI------------------ 298

  Fly   330 GFWTQLSVLLRRHLRSMSRDMFAVQMRLVMHVVVALLLGVVYWQIGGDAQKIVSNVSCLFFVILF 394
               |::|:|..|..:.:.|....:...::..:||.|:||.:|..||...:.|........|.:.|
plant   299 ---TEISLLSSRFWKIIYRTRQLLLTNILESLVVGLVLGTIYLNIGTGKEGIRKRFGLFAFTLTF 360

  Fly   395 VFAGNAMPSILLCMQDSAVFIREYYNGWYSLGAYYLSKVLADLPLQLTCPTMFISIGYFMTGQPP 459
            :.:.... ::.:.:.:..:.:||..:|.|.|.::.|:..|..||..|....::....||:.|...
plant   361 LLSSTTQ-TLPIFIDERPILLRETSSGLYRLSSHILANTLVFLPYLLLIAIIYSVSLYFLVGLCF 424

  Fly   460 EFQRFA----MCWALCVMTAFIGHFIGVIAGSLFTMQLAIFLVPSATIPFLLFSGFFIRLNELSW 520
            .:|..|    :.|.:.:|......|:..:|.:......::.::.:|   |.||||:||....|..
plant   425 SWQALAYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSSVTILLAA---FFLFSGYFISKESLPK 486

  Fly   521 FLRPICDVSFFRYIFEGLMRAIYGYDRGELECY-----ATSNFCYYRTAEQFLKDFQMEGNEFDW 580
            :...:...|.::|..:.|:  |..|.....:|.     |:.|.|.....:...|:...|...:..
plant   487 YWLFMYFFSMYKYALDALL--INEYSCLHNKCLVWFEEASVNSCLVTGGDVLDKNGLHERQRWFN 549

  Fly   581 DMAVLGIFLILLLLAFFVTLNAV 603
            ...:||.|::..:|.|.|.|..|
plant   550 VYMLLGFFVLYRVLCFLVLLKRV 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9664NP_722889.1 ABCG_EPDR 20..243 CDD:213180 81/224 (36%)
EcfA2 23..247 CDD:224047 81/225 (36%)
ABC2_membrane 338..539 CDD:279410 44/204 (22%)
YadH <388..547 CDD:223912 35/162 (22%)
ABCG4NP_194305.1 3a01204 30..572 CDD:273361 152/583 (26%)
P-loop_NTPase 30..230 CDD:304359 77/213 (36%)
ABC2_membrane 304..507 CDD:279410 45/208 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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