DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment OtopLb and otop2

DIOPT Version :9

Sequence 1:NP_608758.1 Gene:OtopLb / 33539 FlyBaseID:FBgn0031514 Length:797 Species:Drosophila melanogaster
Sequence 2:XP_017944835.2 Gene:otop2 / 100496174 XenbaseID:XB-GENE-6045877 Length:588 Species:Xenopus tropicalis


Alignment Length:638 Identity:139/638 - (21%)
Similarity:230/638 - (36%) Gaps:188/638 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 RTGNDAISSALSATYCKLLVLLGVCLPITEVISD------QIPTYVYQGFYVYLYVGSILFVIFL 293
            :.|...:|..|...    :||||..|..:...:|      ::.:::    .|.:.:.||..|.:|
 Frog    58 KKGGRLLSGLLGIN----IVLLGCALVSSGAFTDVSVAEREVLSFL----SVLMGLSSIWMVSYL 114

  Fly   294 YISAFRNRSLFNALKDYHEKNSNVHLKHKVTHFGSFYLRVGAIAFAIGTMVYSGLEFGQFFELNG 358
                     |:.:...|:.|:|         |.|..:||.|.:.|.:.|:|...::.|:...|. 
 Frog   115 ---------LWTSKHKYNLKDS---------HAGPIWLRGGLVLFGVCTLVLDVMKIGKSVTLI- 160

  Fly   359 HPGCRDVFVAITPICRMVLCIAQVQFIFLNTTYMDMAR-HKVTSRFGLMHMVATNLCEWLYVLVE 422
            |  |......:.|:.:.|..:.|..|::::.  .|.|: |...:|.|||..::|||..|:.    
 Frog   161 H--CESPVKIVHPVIQGVFVVIQTYFLWVSC--KDCAQIHMNLTRCGLMITLSTNLAVWMA---- 217

  Fly   423 ETKHEIFHISQHEVDPAHDLVIHNSSMSRTDWAAVNESLHQHHHHHALNNTLVANVSSVIVNMTI 487
                                            |..:||||..|.   ||..:...||:     |:
 Frog   218 --------------------------------AVTDESLHLTHE---LNMDVNYTVSA-----TV 242

  Fly   488 TPSPTPAAFSGCSRTTIMGALVQQLSPFLFPCTIEYSLICAVILFEMWKTVKSIPDIDKTRKNSV 552
            .|........||...|.:....|....:|:|..|||||..:.:.:.|||.|..:           
 Frog   243 GPRAAGGESHGCECATHVCKTFQNGYYYLYPFNIEYSLFASAMSYVMWKNVGRV----------- 296

  Fly   553 KPAAAKPAHHFSVDCSQSHK----GLFFGILIIVMTIISMIMYFVLY-TQPGYELVATQEVTLWE 612
                 ...||.:     .||    .||.|::..:...::.:..|::| .:...|...:|.:|::.
 Frog   297 -----MSGHHHT-----QHKFKTRNLFVGLICGIGVFVAGLGVFIVYKIEVDVEETRSQAITMFY 351

  Fly   613 TF---MYFMCAAAVITGMILMRDLRYIKNTSDEHH--SMDLDNLLLIVAQTGVYLYGMFSILGSY 672
            .|   ...:.:...:.|.|:   .|:.|...|.|.  :..||.:||:.|..|.|....|||:.  
 Frog   352 IFNITALSLMSVVSLAGTII---YRFYKRDMDNHKNPTRTLDVVLLLGAALGQYCISFFSIVA-- 411

  Fly   673 FAKWDTVPDRVEG------IIAEVFGVVQTSLQTMFILHSSHRR--------------------- 710
                 .|..:..|      ::..:..:||.::|..||:...||:                     
 Frog   412 -----MVALQPGGQLHTLILVNALLLIVQHTIQNTFIIEGLHRQPHANSHPAADLQEKDQPPHVY 471

  Fly   711 -------------------------------------CRGTNQVRRKPGREIITFLLVANIAIWF 738
                                                 |...:..|||..:||..||||:||..|.
 Frog   472 INPAATVSHSDHSPSSHEKHEHELETKHHGTPTGFPECHSKSDWRRKALKEISLFLLVSNIIFWI 536

  Fly   739 VNTLIKGRAVFRESHLEFFGVWGWTIITHISMPLAIFYRFHSTICLFEVWKIT 791
            :..............|.|:| :.|..|.:|.:|..||||.|:...|.||:.:|
 Frog   537 MPAFGARPQFDNRLELNFYG-YTWVAIVNIGLPFGIFYRMHAIASLVEVYIMT 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OtopLbNP_608758.1 Otopetrin 330..778 CDD:281218 113/522 (22%)
otop2XP_017944835.2 Otopetrin 134..574 CDD:397346 112/520 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I4017
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D243107at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9424
Panther 1 1.100 - - O PTHR21522
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X278
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.070

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