DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG44002 and Clamp

DIOPT Version :10

Sequence 1:NP_608754.1 Gene:CG44002 / 33535 FlyBaseID:FBgn0264744 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster


Alignment Length:265 Identity:80/265 - (30%)
Similarity:118/265 - (44%) Gaps:46/265 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 EQEEKVHLSEN---KAPTNEVSTQEESK-------------TAQSDNVSEDKGH----------- 144
            :|::::.::::   ..|...:||..:::             |......|...||           
  Fly   252 QQQQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSGHHPVKKRNSQQM 316

  Fly   145 -ICTQCHMSFRRPG--LLELHILRHHTTDGPRPMSSTSEHAVKEELRTKARQLS-RNST--HTCR 203
             .|.:|:.|    |  |:..|....|:..|         .:||:.:..|...|| ||.:  .:|.
  Fly   317 TKCQKCNGS----GVVLVGQHSHASHSGVG---------GSVKQSVTVKTECLSCRNPSKPFSCN 368

  Fly   204 LCNKTFCSKASCVRHQKTHTGEKPFACEICQKPFADLASVKRHLRTHTGERPFKCLTCQSAFSDG 268
            :|...|...:|...|:|.|:|||.:.|.||...||....:|.|.|.||||:|:||.||...||..
  Fly   369 ICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQS 433

  Fly   269 SALRQHIRIHTGERPYKCDMCDKFFRERSDARKHMMSHTAEKRFKCSQCERRFRQPKGLRRHVKL 333
            ..|:.|.|.|:|||||.|.:|||.|...:....|...||.||.:||..|...|.|...|:.|.|:
  Fly   434 PHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKV 498

  Fly   334 CHTDK 338
            ...:|
  Fly   499 HSGEK 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG44002NP_608754.1 zf-AD 4..74 CDD:462262
C2H2 Zn finger 146..166 CDD:275368 6/21 (29%)
COG5048 <162..302 CDD:227381 53/142 (37%)
C2H2 Zn finger 202..222 CDD:275368 6/19 (32%)
C2H2 Zn finger 230..250 CDD:275368 8/19 (42%)
C2H2 Zn finger 258..278 CDD:275368 8/19 (42%)
SUF4-like 282..>342 CDD:411020 22/57 (39%)
C2H2 Zn finger 286..311 CDD:411020 9/24 (38%)
C2H2 Zn finger 286..306 CDD:275368 6/19 (32%)
C2H2 Zn finger 314..335 CDD:411020 7/20 (35%)
C2H2 Zn finger 314..333 CDD:275368 6/18 (33%)
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 57/138 (41%)
C2H2 Zn finger 367..387 CDD:275368 6/19 (32%)
C2H2 Zn finger 395..415 CDD:275368 8/19 (42%)
zf-H2C2_2 407..432 CDD:463886 13/24 (54%)
C2H2 Zn finger 423..443 CDD:275368 8/19 (42%)
C2H2 Zn finger 451..471 CDD:275368 6/19 (32%)
COG5048 475..>529 CDD:227381 10/29 (34%)
C2H2 Zn finger 479..499 CDD:275368 7/19 (37%)
C2H2 Zn finger 507..527 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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