DRSC/TRiP Functional Genomics Resources

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Protein Alignment gkt and TDP1

DIOPT Version :10

Sequence 1:NP_523465.2 Gene:gkt / 33530 FlyBaseID:FBgn0260817 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_197021.2 Gene:TDP1 / 831369 AraportID:AT5G15170 Length:605 Species:Arabidopsis thaliana


Alignment Length:630 Identity:183/630 - (29%)
Similarity:284/630 - (45%) Gaps:142/630 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 MIHTQLKLLEKLFPKQATNKEQEA---------------------HSSSSKPAVTAPVASGSSSS 92
            |.|:|:..   |.|.:|..||..:                     ....|:..:|..|::..|:|
plant     1 MAHSQVAY---LIPLKADLKEDNSSPRITLSEGPNIIGRGNVSIVDKRLSRKHITIIVSTSGSAS 62

  Fly    93 GSLD-TNPSGSSASGPAASQDTSNLAKKQKLNAKN--IRDYIP------VVIEKGGMAKK----- 143
            .|:| |||....:||..   :...:...::::..|  :.:.||      :|:..|..|||     
plant    63 LSVDGTNPVVIRSSGDG---ERKKVKPSEEVSVCNDDLIELIPGHHFFKLVLLNGRAAKKARKAE 124

  Fly   144 -----LERAAPYN-----MFLTAITDSKPTHSEPLSITLQEILDESLGEIESTVQINFMVDIGWL 198
                 :.|..|.|     .|.....|:.|..:....:::.::::   |::.:.:..|:||||.||
plant   125 DDVEAIRRFCPPNEKLPSTFRLLSVDALPDWANTSCVSINDVIE---GDVVAAILSNYMVDIDWL 186

  Fly   199 LGHY-YFAGILDKPLLLLYGDESPELLSIGKFKQQVTAIRVKMPTPFATSHTKMMFLGYSDGSMR 262
            :... ..|.|....::...||...|.:...|....:.. :.::|..|.|.|:|.:||.|..| :|
plant   187 MSACPKLANIPQVMVIHGEGDGRQEYIQRKKPANWILH-KPRLPISFGTHHSKAIFLVYPRG-VR 249

  Fly   263 VVISTANLYEDDWHNRTQGLWISPKLPALPVDADTGAGESLTGFKQDLMLYLVEYKISQLQPW-- 325
            ||:.||||...||:|::||||:. ..|....|.|...|   .||:.||:.||...|      |  
plant   250 VVVHTANLIHVDWNNKSQGLWMQ-DFPWKDDDKDPPKG---CGFEGDLIDYLNVLK------WPE 304

  Fly   326 --------------IARIRNSDFSAINVFFLGSVPGGHREGSVRGHPWGHARLASLLAKHAAPID 376
                          .|..:..|:|...|..:.||||.|...::  :.|||.:|.::|.:   .|.
plant   305 FTANLPGRGNVKINAAFFKKFDYSDATVRLIASVPGYHTGFNL--NKWGHMKLRTILQE---CIF 364

  Fly   377 D----RIPVVCQSSSIGSLGANVQAWIQQDFVNSLK----KDSTPVGKLRQMPPFKMIYPSYGNV 433
            |    |.|::.|.||:|||.   :.|: .:|.|||.    :|.||:|....:    :|:|:..:|
plant   365 DREFRRSPLIYQFSSLGSLD---EKWL-AEFGNSLSSGITEDKTPLGPGDSL----IIWPTVEDV 421

  Fly   434 AGSHDGMLGGGCLPYGKNTNDKQPWLKDYLQQWKSSDRFRSRAMPHIKSYTRFNLEDQSVYWFVL 498
            ..|.:|...|..:| ....|.::|:||.|..:||:....|.|||||||::||:|  ||.:.||:|
plant   422 RCSLEGYAAGNAIP-SPLKNVEKPFLKKYWARWKADHSARGRAMPHIKTFTRYN--DQKIAWFLL 483

  Fly   499 TSANLSKAAWGCFNKNSNIQPCLRIANYEAGVLFLPRFVTGED---------------------- 541
            ||:||||||||...|| |.|  |.|.:||.||||||..:..:.                      
plant   484 TSSNLSKAAWGALQKN-NSQ--LMIRSYELGVLFLPSPIKTQGCVFSCTESNPSVMKAKQETKDE 545

  Fly   542 --------TFPLGNNRD--GVPAFPLPYDVPLTPYAPDDKPFLMD 576
                    |.....:||  .:.:.|:||.:|..||:|:|.|:..|
plant   546 VEKRSKLVTMTWQGDRDLPEIISLPVPYQLPPKPYSPEDVPWSWD 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gktNP_523465.2 zf-CCHH 3..25 CDD:463043
Tyr-DNA_phospho 152..567 CDD:461824 147/471 (31%)
TDP1NP_197021.2 FHA_APTX-like 8..111 CDD:438723 20/108 (19%)
Tyr-DNA_phospho 144..581 CDD:461824 147/470 (31%)
Blue background indicates that the domain is not in the aligned region.

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