DRSC/TRiP Functional Genomics Resources

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Protein Alignment gkt and Tdp1

DIOPT Version :10

Sequence 1:NP_523465.2 Gene:gkt / 33530 FlyBaseID:FBgn0260817 Length:580 Species:Drosophila melanogaster
Sequence 2:XP_006240494.1 Gene:Tdp1 / 314380 RGDID:1309618 Length:625 Species:Rattus norvegicus


Alignment Length:612 Identity:196/612 - (32%)
Similarity:290/612 - (47%) Gaps:98/612 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 SEMIHTQLKLLEKLFPKQATNKEQEAHSSSSKPAVTAPVASGSSSSGSLDTNPSGSSAS------ 105
            :.|.|......|..:.|...:...::.....|| |....:||..:...:...|:.:.:.      
  Rat     9 ARMAHRSTMSQESSYGKWTISSSDDSEDEKPKP-VKPSTSSGPQAGQGVSKEPTYTCSEARKAAH 72

  Fly   106 ----GPAASQDTSNLA--KKQKLN----------------------------------------- 123
                .|....:|.::.  ||||::                                         
  Rat    73 KRQISPVKFNNTDSVLPHKKQKMDSPEGLGWCLSSSDDEQQPDVTQQEQPKGVPPQEKKYAPSAN 137

  Fly   124 ---AKNIRDYIPVVIEKGGMAKK--------------LERAAPYNMFLTAITDSKPTHSEPLSIT 171
               |:.:.|..|....:...|.:              |::..|:..:||.::..|..::.. ::.
  Rat   138 VTTAQKVEDRSPPDSHRAQRADEEYETSGEGQDIWDMLDKENPFQFYLTRVSGIKAKYNSK-ALH 201

  Fly   172 LQEILDESLGEIESTVQINFMVDIGWLLGHYYFAGILDKPLLLLYGDE---SPELLSIGKFKQQV 233
            :::||....|.:.|:.|.|:..|:.||:..|. .....||:||::||:   ..:|.:..|....:
  Rat   202 IKDILSPLFGTLVSSAQFNYCFDVNWLIKQYP-PEFRKKPILLVHGDKREAKADLHAQAKPYANI 265

  Fly   234 TAIRVKMPTPFATSHTKMMFLGYSDGSMRVVISTANLYEDDWHNRTQGLWISPKLPALPVDADTG 298
            :..:.|:...|.|.|||||.|.|.:| :||||.|:||..:|||.:|||:|:||..|.: ...:..
  Rat   266 SLCQAKLDIAFGTHHTKMMLLLYEEG-LRVVIHTSNLIREDWHQKTQGIWLSPLYPRI-YQGNHT 328

  Fly   299 AGESLTGFKQDLMLYLVEYKISQLQPWIARIRNSDFSAINVFFLGSVPGGHREGSVRGHPWGHAR 363
            :|||.|.||.||..||:.|....||.||..|:..|.|..||:.:||.| |..:||.:.: |||.|
  Rat   329 SGESSTHFKADLTSYLMAYNAPPLQEWIDIIQEHDLSETNVYLIGSTP-GRFQGSHKDN-WGHFR 391

  Fly   364 LASLLAKHA--APIDDRIPVVCQSSSIGSLGANVQAWIQQDFVNSL----KKDSTPVGKLRQMPP 422
            |..||..||  ||..:..|||.|.|||||||.:...|:..:|..||    ::..||.   |...|
  Rat   392 LRKLLQAHAPSAPRGECWPVVGQFSSIGSLGPDESKWLCSEFKESLLAVREEGRTPG---RSAVP 453

  Fly   423 FKMIYPSYGNVAGSHDGMLGGGCLPYGKNTNDKQPWLKDYLQQWKSSDRFRSRAMPHIKSYTRFN 487
            ..:||||..||..|.:|...||.||||..|.:||.||..|..:|.:....||.||||||:|.|.:
  Rat   454 LHLIYPSVENVRTSLEGYPAGGSLPYGIQTAEKQRWLHPYFHKWSAETSGRSNAMPHIKTYMRPS 518

  Fly   488 LEDQSVYWFVLTSANLSKAAWGCFNKNSNIQPCLRIANYEAGVLFLPRFVTGEDTFPL-----GN 547
            .:...:.||::|||||||||||...||.   ..|.|.:||.||||||. ..|.|||.:     .:
  Rat   519 PDFSKLAWFLVTSANLSKAAWGALEKNG---AQLMIRSYELGVLFLPS-AFGLDTFKVKQKFFSS 579

  Fly   548 NRDGVPAFPLPYDVPLTPYAPDDKPFL 574
            :.:.:.:||:|||:|...|...|:|::
  Rat   580 SSEPMASFPVPYDLPPELYGSKDRPWI 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gktNP_523465.2 zf-CCHH 3..25 CDD:463043
Tyr-DNA_phospho 152..567 CDD:461824 171/428 (40%)
Tdp1XP_006240494.1 Tyr-DNA_phospho 183..599 CDD:461824 171/428 (40%)
Blue background indicates that the domain is not in the aligned region.

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