DRSC/TRiP Functional Genomics Resources

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Protein Alignment gkt and tdpo-1

DIOPT Version :10

Sequence 1:NP_523465.2 Gene:gkt / 33530 FlyBaseID:FBgn0260817 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_500149.1 Gene:tdpo-1 / 176996 WormBaseID:WBGene00018678 Length:451 Species:Caenorhabditis elegans


Alignment Length:502 Identity:162/502 - (32%)
Similarity:250/502 - (49%) Gaps:89/502 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 SLDTNPSGSSASGPAASQDTSNLAKKQKLNAKNIRDYIPVVIEKGGMAKKLERAAPYNMFLTAIT 158
            ::...|..||.:.|          ..:|||:           ::.|  ..||   |.:::.|.|.
 Worm     4 TIQETPGPSSTTVP----------PPKKLNS-----------QRNG--SNLE---PGSIYFTPIG 42

  Fly   159 DSKPTHSEPLSITLQE-----ILDESLGEIE--STVQINFMVDIGWLLGHYYFAGILDKPLLLLY 216
            .        :|:..||     .|||.|.:|.  :::..:||:|..:|:|.|. ..:.:.|:.|:.
 Worm    43 G--------ISVPRQESESSRSLDEILADIRPINSLHFSFMLDFEFLIGSYP-PSLREYPITLVV 98

  Fly   217 G-DESPELLSIGKFKQQVTAIRVKMPTPFATSHTKMMFLGYSDGSMRVVISTANLYEDDWHNRTQ 280
            | .::|:||...|.::.||.:...:|.||.|.||||..|...||...|::|||||..|||..:||
 Worm    99 GAPDAPDLLKCTKNQKLVTVVGASLPIPFGTHHTKMSILEDEDGRFHVIVSTANLVPDDWEFKTQ 163

  Fly   281 GLWISPKLPALPVDADTGAGESLTGFKQDLMLYLVEYKISQLQPWIARIRNSDFSAINVFFLGSV 345
            ..:.:     ..|...:|. ...:.|:.||:.||..|: :||..|...::..|||.|:...:.|.
 Worm   164 QFYYN-----FGVKIASGT-VPRSDFQDDLLEYLSMYR-NQLDTWKQLLQKVDFSQISDRLIFST 221

  Fly   346 PGGHREGSVRGHPWGHARLASLLAKHAAPID------DRIPVVCQSSSIGSLGANVQAWIQQDFV 404
            ||.|.:...: .| ||.||..:|:: ..|.|      :|...|.|.|||||||:....|.:..|:
 Worm   222 PGYHTDPPTQ-RP-GHPRLFRILSE-KFPFDASYEHTERCTFVAQCSSIGSLGSAPINWFRGQFL 283

  Fly   405 NSLKKDSTPVGKLRQMPPFKM--IYPSYGNVAGSHDGMLGGGCLPYGKNTNDKQPWLKDYLQQWK 467
            .|| :.:.|..|.:   |.||  ::||..:|..|..|..||..:||..:.:.:|.||:..:.:|:
 Worm   284 QSL-EGANPSPKQK---PAKMYLVFPSVEDVRTSCQGYAGGCSVPYRNSVHARQKWLQGNMCKWR 344

  Fly   468 SSDRFRSRAMPHIKSYTRFNLEDQSV-YWFVLTSANLSKAAWG--CFNKNSNIQPCLRIANYEAG 529
            |:.:.|:.|:||.|:|.::   |:.| .|.:||||||||||||  .|||:.|::. |.|.::|.|
 Worm   345 SNAKRRTNAVPHCKTYVKY---DKKVAIWQLLTSANLSKAAWGEVSFNKSKNVEQ-LMIRSWEMG 405

  Fly   530 VLFLPRFVTGEDTFPLGNNRDGVPAFPLPYDVPLTPYAPDDKPFLMD 576
            ||.         |.|        ..|.:|:|.||.||:..|:||:.|
 Worm   406 VLI---------TDP--------SRFNIPFDYPLVPYSATDEPFVTD 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gktNP_523465.2 zf-CCHH 3..25 CDD:463043
Tyr-DNA_phospho 152..567 CDD:461824 146/433 (34%)
tdpo-1NP_500149.1 PLDc_SF 32..194 CDD:472788 56/179 (31%)
PLDc_mTdp1_2 215..410 CDD:197291 76/214 (36%)
Blue background indicates that the domain is not in the aligned region.

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