DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mad and WHI3

DIOPT Version :9

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_014202.1 Gene:WHI3 / 855524 SGDID:S000005141 Length:661 Species:Saccharomyces cerevisiae


Alignment Length:558 Identity:101/558 - (18%)
Similarity:178/558 - (31%) Gaps:197/558 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 NNNNIHHINNNNNHICSSGSSNNLNLTTAISGSSNRMDTDDVESNTSSAMSTLGSLFSFTSP-AV 98
            |...:..|::...::.|..||...|.|:.::.|::.|....:.|..|.        |||:.| :.
Yeast   185 NKTTVEIIDDTTKNLVSFPSSAIFNDTSRLNKSNSGMKRPSLLSQRSR--------FSFSDPFSN 241

  Fly    99 KKLLGWKQGDEEEKWAEKAVDSLVKKLKKRKGAIEELERALSCPGQPSKC------VTIPRSLDG 157
            ...|..:|..::::..::......:|                  ..|.:|      .:||.|..|
Yeast   242 DSPLSQQQSQQQQQQPQQPQQHSTQK------------------HSPQQCNQQQVNSSIPLSSQG 288

  Fly   158 RLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKRVESPVLPPV 222
            ::...|..                .||.:|......|.....|...:..|    ..:...:....
Yeast   289 QVIGLHSN----------------HSHQDLSVESTIQTSDIGKSFLLRDN----TEINEKIWGTS 333

  Fly   223 LVPRHSEFAPGHSMLQFNHVAEPSMP----HNVSYSNSGFNSHSLSTSNTSVGSPSSVNSNPNSP 283
            .:|        .|:..:....:||.|    .|.|.|..|.:....|.::|:: :|::.|::.|  
Yeast   334 GIP--------SSINGYMSTPQPSTPTLEWGNTSASQHGSSFFLPSAASTAI-APTNSNTSAN-- 387

  Fly   284 YDSLAGTPPPAYSPSEDGNSNNPNDGGQLLDA-------QMGDVAQVSYSEPAFWASIAYYELNC 341
                      |.:.|.:|.||  |...|.|.|       |:|:....|.:               
Yeast   388 ----------ANASSNNGASN--NGANQALSASSQQPMMQIGNTINTSLT--------------- 425

  Fly   342 RVGEVFHCNNNSVIVDG--------FTNPSNNSDRCCLGQLSN-------------VNRNST--- 382
                    ::||:...|        .:|..|.||.....|..|             ||:::|   
Yeast   426 --------SSNSLPPYGLMSSQSQHISNMVNTSDMNITPQKQNRFMQQPQPEHMYPVNQSNTPQK 482

  Fly   383 IENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIP---------PGC 438
            :...|....:..|....|..:.:. ::.||...|:         ..|.:.:||         |.|
Yeast   483 VPPARLSSSRNSHKNNSTTSLSSN-ITGSASISQA---------DLSLLARIPPPANPADQNPPC 537

  Fly   439 SLKIFNN-------QEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWI 496
            :.....|       ||..||.|.  ..||.           |:||        ..::.||..   
Yeast   538 NTLYVGNLPSDATEQELRQLFSG--QEGFR-----------RLSF--------RNKNTTSNG--- 578

  Fly   497 EIHLHGPLQWLD--------KVLTQMGS---PHNAISS 523
              |.|||:.:::        :.|.::..   |.:.:||
Yeast   579 --HSHGPMCFVEFDDVSFATRALAELYGRQLPRSTVSS 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 18/129 (14%)
MH2_SMAD_1_5_9 325..525 CDD:199822 44/250 (18%)
WHI3NP_014202.1 RRM 450..>648 CDD:223796 39/201 (19%)
RRM_scw1_like 536..624 CDD:409691 22/105 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.75 Normalized mean entropy S660
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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