DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mad and gb:cr929477

DIOPT Version :9

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:XP_009299441.1 Gene:gb:cr929477 / 794669 ZFINID:ZDB-GENE-141211-39 Length:505 Species:Danio rerio


Alignment Length:495 Identity:192/495 - (38%)
Similarity:258/495 - (52%) Gaps:93/495 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 VKKLLGWKQGDEEEKWAEKAVDSLVKKLKKRKGAIEELERALSCPG-QPSKCVTIPRSLDGRLQV 161
            |..|:..:||.|.|.::::|::|||||||::|..::.|..|::..| .|||||||.|:|||||||
Zfish    17 VHSLMCHRQGGESESFSKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQV 81

  Fly   162 SHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKRVESPVLP-PVLV- 224
            :.|||.|||||.|:||||||.. :|||.::.||:.|..|...||:|||||:||.||.:. .||. 
Zfish    82 AGRKGFPHVIYARLWRWPDLHK-NELKHVKYCQFAFDLKCDNVCVNPYHYERVVSPSIDLSVLTL 145

  Fly   225 ------------------PRHSEFAPGHSMLQFNHVAEPSMPHNVSYSNSGFNSHSL-----STS 266
                              ..||....|||:....|.|.||.|.:.      |||..|     .||
Zfish   146 GGPGPSGELMVKEEFEGQSSHSAADGGHSIQTIQHTATPSAPPDT------FNSPVLLPPADHTS 204

  Fly   267 NTSVGSPSSVNSNP-NSPYDSLAGTPPPAYSPSEDGNSNN----PNDGGQLLDAQMGDVAQ---- 322
            :||..:.|::.:.| |:|.....|:..|...|.::|:..:    |:.|      |...|..    
Zfish   205 STSTSAFSAMAAGPNNAPSSWPRGSSFPPSIPHQNGHLQHHPPLPHTG------QYWSVHNELAF 263

  Fly   323 ----VSYSEPAFWASIAYYELNCRVGEVFHCNNNS--VIVDGFTNPSNNSDRCCLGQLSNVNRNS 381
                .::..|.:|.||||:|::.:|||.|...:|.  |.|||:.:|| ..||.||||||||:|..
Zfish   264 QPPISTHPAPDYWCSIAYFEMDIQVGETFKVPSNCPVVTVDGYVDPS-GGDRFCLGQLSNVHRTE 327

  Fly   382 TIENTRRHIGKGVHLYYV-TGEVYAECLSDSAIFVQSRNCNYHHGFHP-STVCKIPPGCSLKIFN 444
            .||..|.||||||.|... .|:|:..||||.|:||||...:...|..| ..|.||.|...:|:|:
Zfish   328 AIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 392

  Fly   445 NQE-----------------------------------FAQLLSQSVNNGFEAVYELTKMCTIRM 474
            .::                                   .|..:|.|...|. .|.:|.::|.:||
Zfish   393 LRQCHRQMQQQAATAQAAAAAQADAVAGNIPGPGSVGGIAPAISLSAAAGI-GVDDLRRLCILRM 456

  Fly   475 SFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQM 514
            |||||||.:|.||.:..||||||||||..||.||:||..|
Zfish   457 SFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTM 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 64/118 (54%)
MH2_SMAD_1_5_9 325..525 CDD:199822 94/229 (41%)
gb:cr929477XP_009299441.1 MH1_SMAD_4 11..135 CDD:199816 64/118 (54%)
MH2_SMAD_4 273..494 CDD:199823 92/222 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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