DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mad and Smad5

DIOPT Version :9

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_067724.1 Gene:Smad5 / 59328 RGDID:620158 Length:465 Species:Rattus norvegicus


Alignment Length:465 Identity:342/465 - (73%)
Similarity:384/465 - (82%) Gaps:23/465 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 MSTLGSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKRKGAIEELERALSCPGQPSKC 148
            |:::.|||||||||||:|||||||||||||||||||:|||||||:|||:||||:|||.|||||||
  Rat     1 MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSKC 65

  Fly   149 VTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKR 213
            ||||||||||||||||||||||||||||||||||||||||||::|::||.:||||||||||||||
  Rat    66 VTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHYKR 130

  Fly   214 VESPVLPPVLVPRHSEFAPGHSML-QFNHVA--EPSMPHNVSYSNSGFNSHS----LSTSNTSVG 271
            ||||||||||||||:||.|.||:| ||.:::  ||.||.|.::.:|....:|    ||.::....
  Rat   131 VESPVLPPVLVPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFHQPNSTPFPLSPNSPYPP 195

  Fly   272 SPSS-------VNSNPNSPYDSLAGTPPPAYSPSED--GNSNN-PNDGGQLLDAQM------GDV 320
            ||:|       .:|.|.||:...|.||||||.|.:|  |..|: |.|....:..|:      .||
  Rat   196 SPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQPMDTSNNMIPQIMPSISSRDV 260

  Fly   321 AQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIEN 385
            ..|:|.||..|.||.|||||.||||.||.::.||:|||||:|:||..|.|||.||||||||||||
  Rat   261 QPVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPANNKSRFCLGLLSNVNRNSTIEN 325

  Fly   386 TRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIPPGCSLKIFNNQEFAQ 450
            ||||||||||||||.|||||||||||:|||||||||:||||||:||||||..|||||||||||||
  Rat   326 TRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFNNQEFAQ 390

  Fly   451 LLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMG 515
            ||:||||:|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   391 LLAQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMG 455

  Fly   516 SPHNAISSVS 525
            ||.|.|||||
  Rat   456 SPLNPISSVS 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 110/122 (90%)
MH2_SMAD_1_5_9 325..525 CDD:199822 171/199 (86%)
Smad5NP_067724.1 MH1_SMAD_1_5_9 10..133 CDD:199814 110/122 (90%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..243 28/79 (35%)
MH2_SMAD_1_5_9 265..465 CDD:199822 171/199 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 322 1.000 Domainoid score I1179
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 701 1.000 Inparanoid score I638
OMA 1 1.010 - - QHG48637
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 1 1.000 - - otm44661
orthoMCL 1 0.900 - - OOG6_103959
Panther 1 1.100 - - LDO PTHR13703
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X373
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.880

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