DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mad and smad3

DIOPT Version :9

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:XP_017947531.1 Gene:smad3 / 493272 XenbaseID:XB-GENE-481992 Length:461 Species:Xenopus tropicalis


Alignment Length:491 Identity:280/491 - (57%)
Similarity:334/491 - (68%) Gaps:82/491 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 LGSLFSFTSPAVKKLLGWKQGD---EEEKWAEKAVDSLVKKLKKRKGAIEELERALSCPGQPSKC 148
            :.|:..||.|.||:|||||:|:   :||||.||||.|||||||| .|.::|||:||:.....:||
 Frog     1 MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKK-SGQLDELEKALTTQSISTKC 64

  Fly   149 VTIP------------------------------------RSLDGRLQVSHRKGLPHVIYCRVWR 177
            :|||                                    ||||||||||||||||||||||:||
 Frog    65 ITIPRKETFSDDESFQQTCILCANPSTSPHVSRTANALCTRSLDGRLQVSHRKGLPHVIYCRLWR 129

  Fly   178 WPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKRVESPVLPPVLVPRHSEF-APGHSMLQFNH 241
            ||||.|||||:.:|:|:|.|:.|:.|||:|||||:|||:||||||||||::|. |...|:..::|
 Frog   130 WPDLHSHHELRAMEVCEYAFNMKKDEVCVNPYHYQRVETPVLPPVLVPRNTEIPAEFPSLDDYSH 194

  Fly   242 VAEPSMPHNVSYSNSGFNSHSLSTSNTSVGSPSSVNSNPNSPYDSLAGTPPPAYSPSEDGNS--- 303
                |:|.|               :|...|....:|..|.        ||||.|. ||||.:   
 Frog   195 ----SIPEN---------------TNFPAGIEPQINYIPE--------TPPPGYL-SEDGETSDQ 231

  Fly   304 -NNPNDGG--QLLDAQMG------DVAQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGF 359
             |:..|.|  .|....|.      |:..|:|.|||||.||:|||||.||||.||.:..|:.||||
 Frog   232 MNHSIDTGSPNLSPNSMSPAHSNMDLQPVTYCEPAFWCSISYYELNQRVGETFHASQPSMTVDGF 296

  Fly   360 TNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHH 424
            |:|| ||:|.|||.|||||||:.:|.||||||:||.|||:.|||:||||||:||||||.|||..:
 Frog   297 TDPS-NSERFCLGLLSNVNRNAAVEMTRRHIGRGVRLYYIGGEVFAECLSDNAIFVQSPNCNQRY 360

  Fly   425 GFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDV 489
            |:||:|||||||||:||||||||||.||:||||.||||||:||:||||||||||||||||.||.|
 Frog   361 GWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTV 425

  Fly   490 TSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS 525
            ||||||||:||:||||||||||||||||....||||
 Frog   426 TSTPCWIELHLNGPLQWLDKVLTQMGSPSIRCSSVS 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 86/161 (53%)
MH2_SMAD_1_5_9 325..525 CDD:199822 153/199 (77%)
smad3XP_017947531.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X373
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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