DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mad and smad3b

DIOPT Version :10

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_778258.1 Gene:smad3b / 326283 ZFINID:ZDB-GENE-030128-4 Length:423 Species:Danio rerio


Alignment Length:462 Identity:273/462 - (59%)
Similarity:329/462 - (71%) Gaps:65/462 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 SLFSFTSPAVKKLLGWKQGD---EEEKWAEKAVDSLVKKLKKRKGAIEELERALSCPGQPSKCVT 150
            |:..||.|.||:|||||:|:   :||||.||||.|||||||| .|.:||||:|::.....:||:|
Zfish     2 SILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKK-TGQLEELEKAITTQNINTKCIT 65

  Fly   151 IPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKRVE 215
            |||||||||||||:||||||||||:||||||||||||:.:|:|::.|..|:.|||:|||||:|||
Zfish    66 IPRSLDGRLQVSHKKGLPHVIYCRLWRWPDLQSHHELRAVEMCEFAFHTKKDEVCVNPYHYQRVE 130

  Fly   216 SPVLPPVLVPRHSEFAPGHSMLQFNHVAEPSMPHNVSYSNSGFNSHSLSTSNTSVGSPSSVNSNP 280
            :||||||||||.::..     ..|..:.:.|:|.|..:                   |:.:  .|
Zfish   131 TPVLPPVLVPRRADIP-----TDFPPLDDYSIPENTIF-------------------PAGI--EP 169

  Fly   281 NSPYDSLAGTPPPAYSPSEDGNSNNPNDGGQLLDAQMG----------------------DVAQV 323
            .|.|  :..||||.|. ||||.::         |.||.                      |:..|
Zfish   170 PSNY--IPETPPPGYL-SEDGETS---------DHQMSHSMDTGSPTLSPNPVSPANSNLDLQPV 222

  Fly   324 SYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRR 388
            :|.|.|||.||:|||||.||||.||.:..|:.|||||:|| |::|.|||.|||||||:.:|.|||
Zfish   223 TYCESAFWCSISYYELNQRVGETFHASQPSLTVDGFTDPS-NAERFCLGLLSNVNRNAAVELTRR 286

  Fly   389 HIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIPPGCSLKIFNNQEFAQLLS 453
            |||:||.|||:.|||:|||||||||||||.|||..:|:||:|||||||||:||||||||||.||:
Zfish   287 HIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLA 351

  Fly   454 QSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPH 518
            ||||.||||||:||:||||||||||||||||.||.|||||||||:||:||||||||||||||||:
Zfish   352 QSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPN 416

  Fly   519 NAISSVS 525
            ...||||
Zfish   417 LRCSSVS 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 85/125 (68%)
MH2_SMAD_1_5_9 325..525 CDD:199822 152/199 (76%)
smad3bNP_778258.1 MH1_SMAD_2_3 7..131 CDD:199815 84/124 (68%)
MH2_SMAD_2_3 222..412 CDD:199826 146/190 (77%)

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