DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mad and smad7

DIOPT Version :9

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_778257.2 Gene:smad7 / 326282 ZFINID:ZDB-GENE-030128-3 Length:372 Species:Danio rerio


Alignment Length:450 Identity:121/450 - (26%)
Similarity:183/450 - (40%) Gaps:135/450 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 ESNTSSAMSTLG-SLFSFTSPAVKKLLGWKQGDEEEKWAEKAVD-SLVKKLKKRKGAIEELERAL 139
            :::|.:...|.| .|.|..:|          |.|.|.   ||:. |::||:|:::  :|.|.:|:
Zfish    25 DADTGTRGGTAGCCLASKPNP----------GTEAEL---KALTYSILKKIKEKQ--LEVLLQAV 74

  Fly   140 -SCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKE 203
             |..|..|.|:.:|...|.||. .|...||.::| :|:|||||:...|||.|..|:.......:.
Zfish    75 ESRGGARSPCLLLPGKADARLG-QHSYPLPLLLY-KVFRWPDLRHSSELKRLSCCESYGKINPEL 137

  Fly   204 VCINPYHYKRVESPVLPPVLVPRHSEFAPGHSMLQFNHVAEPSMPHNVSYSNSGFNSHSLSTSNT 268
            ||.||:|..|:.....||   |.:|.:                                      
Zfish   138 VCCNPHHMSRLCELESPP---PPYSRY-------------------------------------- 161

  Fly   269 SVGSPSSVNSNPNSPYDSLAGTPPPAYSPSEDGNSNNPNDGGQLLDAQMG---DVAQVSYSEPAF 330
                |:.....|:||     |:.|.           :...||....|.||   .:|.....|...
Zfish   162 ----PTDFLKPPDSP-----GSVPA-----------STETGGTAYSAPMGFSDSLALQERGEQPH 206

  Fly   331 WASIAYYELNCRVGEVFHCNNNSVIV-------DGFTNPSNNSDRCCLGQLSNVNRNSTIENTRR 388
            |..:||:|...|||.::.....|:.:       .||          |||||::.|::..::..|.
Zfish   207 WCVVAYWEEKTRVGRLYSVQEPSLDIFYDLPQGTGF----------CLGQLASENKSQLVQMVRA 261

  Fly   389 HIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPST----VCKIPPGCSLKIF------ 443
            .||.|:.|......|:....|...||::|...:     :|.:    |.|:.||.|:|.|      
Zfish   262 KIGYGIQLSREADGVWVYNRSCYPIFIKSATLD-----NPDSRTLLVHKVFPGFSIKAFDFEKAG 321

  Fly   444 -----NNQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEI 498
                 |:.||    ||....||          |:::|||||||..|.||.::|.|||:|:
Zfish   322 SLQRPNDHEF----SQQPRTGF----------TVQISFVKGWGQCYTRQFISSCPCWLEV 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 42/124 (34%)
MH2_SMAD_1_5_9 325..525 CDD:199822 58/195 (30%)
smad7NP_778257.2 MH1_SMAD_7 36..152 CDD:199818 45/132 (34%)
MH2_SMAD_7 200..370 CDD:199825 58/196 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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