DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mad and smad5

DIOPT Version :9

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_001333238.1 Gene:smad5 / 30641 ZFINID:ZDB-GENE-990603-9 Length:464 Species:Danio rerio


Alignment Length:468 Identity:347/468 - (74%)
Similarity:385/468 - (82%) Gaps:30/468 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 MSTLGSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKRKGAIEELERALSCPGQPSKC 148
            |:::.|||||||||||:|||||||||||||||||||:|||||||:|||:|:||:|||.|||||||
Zfish     1 MTSMSSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEDLEKALSSPGQPSKC 65

  Fly   149 VTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKR 213
            |||||||||||||||||||||||||||||||||||||||||||:|:|||.:||||||||||||||
Zfish    66 VTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEVCEYPFGSKQKEVCINPYHYKR 130

  Fly   214 VESPVLPPVLVPRHSEFAPGHSML-QFNHVA--EPSMPHNVSYSNSGFNSH-------------- 261
            |||||||||||||||||.|.||:| ||.:::  ||.||.|.::..| |..|              
Zfish   131 VESPVLPPVLVPRHSEFNPQHSLLVQFRNLSHNEPHMPLNATFPES-FQQHSGGSSFPISPNSPY 194

  Fly   262 --SLSTSNTSVGSPSSVNSNPNSPYDSLAGTPPPAYSP-----SEDGNSNNPNDGGQLLDAQM-- 317
              |.::|.|...||:|  |.|:||:...|.||||||.|     .:|| |.:...|..|....|  
Zfish   195 PPSPASSGTYPNSPAS--SGPSSPFQLPADTPPPAYMPPDEQMGQDG-SQSMETGSSLAPQNMPR 256

  Fly   318 GDVAQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNST 382
            |||..|.|.||:.|.||.|||||.||||.:|.::.||:|||||:||||.:|.|||.|||||||||
Zfish   257 GDVQPVEYQEPSHWCSIVYYELNNRVGEAYHASSTSVLVDGFTDPSNNKNRFCLGLLSNVNRNST 321

  Fly   383 IENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIPPGCSLKIFNNQE 447
            |||||||||||||||||.||||||||||::||||||||||||||||:||||||.|||||||||||
Zfish   322 IENTRRHIGKGVHLYYVGGEVYAECLSDTSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNNQE 386

  Fly   448 FAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLT 512
            |||||:||||:|||||||||||||||||||||||||||||||||||||||:||||||||||||||
Zfish   387 FAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEVHLHGPLQWLDKVLT 451

  Fly   513 QMGSPHNAISSVS 525
            |||||.|.|||||
Zfish   452 QMGSPLNPISSVS 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 111/122 (91%)
MH2_SMAD_1_5_9 325..525 CDD:199822 171/199 (86%)
smad5NP_001333238.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..258 30/95 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 325 1.000 Domainoid score I1166
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 700 1.000 Inparanoid score I650
OMA 1 1.010 - - QHG48637
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 1 1.000 - - otm26196
orthoMCL 1 0.900 - - OOG6_103959
Panther 1 1.100 - - LDO PTHR13703
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2797
SonicParanoid 1 1.000 - - X373
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.910

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