DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mad and sma-2

DIOPT Version :9

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_001370321.1 Gene:sma-2 / 176229 WormBaseID:WBGene00004856 Length:418 Species:Caenorhabditis elegans


Alignment Length:445 Identity:230/445 - (51%)
Similarity:288/445 - (64%) Gaps:50/445 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 VKKL---LGWKQGDEEEKWAEKAVDSLVKKL-KKRKGAIEELERALSCPG-QPSKCVTIPRSLDG 157
            :||:   |.||||||:|.||:||:|:|:||| |..|.|:|.||.||.|.| |.::||||||||||
 Worm     7 IKKITERLKWKQGDEDENWAKKAIDNLMKKLIKHNKQALENLEFALRCQGQQKTECVTIPRSLDG 71

  Fly   158 RLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKRVESP-VLPP 221
            |||:||||.|||||||||:||||||||||||.:|.|::.:.:.||::||||||||||.:. ||||
 Worm    72 RLQISHRKALPHVIYCRVYRWPDLQSHHELKAIEDCRFCYESGQKDICINPYHYKRVHATGVLPP 136

  Fly   222 VLVPRHSEFAPGH-----SMLQFNHVAEPSMPHNVSYSNSGFNSHSLSTSNTSVGSPSSVNS-NP 280
            |||||:||..|..     :..|...::...||.||:.:|..|.::.....|     |:.:.. :.
 Worm   137 VLVPRYSEKPPQEVPPTLAKFQLMEMSGSRMPQNVNMANVNFTANQFHQYN-----PNGIEEMDT 196

  Fly   281 NSPYDSLAGTPPPAYSPSEDGNSNNPNDGGQLLDAQMGDVAQVSYS---EPAFWASIAYYELNCR 342
            :..:|...|.|                            ...|.:.   |..|||:::|||||.|
 Worm   197 SQKFDIPPGVP----------------------------TCLVPFDKVWEEQFWATVSYYELNTR 233

  Fly   343 VGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYV--TGEVYA 405
            |||....::.::.:||||:|..|..:..||..||||||:||||||||||.||.|.||  .|.::|
 Worm   234 VGEQVKVSSTTITIDGFTDPCINGSKISLGLFSNVNRNATIENTRRHIGNGVKLTYVRSNGSLFA 298

  Fly   406 ECLSDSAIFVQSRNCNYHHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMC 470
            :|.|||||||||.||||.:|||.:||.||...||||||:.:.|.|||......||:|.::|.||.
 Worm   299 QCESDSAIFVQSSNCNYINGFHSTTVVKIANKCSLKIFDMEIFRQLLEDCSRRGFDASFDLQKMT 363

  Fly   471 TIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS 525
            .|||||||||||||.||||||||||||||||.||.|||:||:.||.....|||:|
 Worm   364 FIRMSFVKGWGAEYQRQDVTSTPCWIEIHLHAPLAWLDRVLSTMGPTPRPISSIS 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 82/122 (67%)
MH2_SMAD_1_5_9 325..525 CDD:199822 122/204 (60%)
sma-2NP_001370321.1 MH1 5..130 CDD:412134 82/122 (67%)
MH2_R-SMAD 222..405 CDD:199820 114/182 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167458
Domainoid 1 1.000 226 1.000 Domainoid score I1435
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 431 1.000 Inparanoid score I962
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48637
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 1 1.000 - - oto18045
orthoMCL 1 0.900 - - OOG6_103959
Panther 1 1.100 - - LDO PTHR13703
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2797
SonicParanoid 1 1.000 - - X373
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.800

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