DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mad and Smad6

DIOPT Version :9

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_032568.3 Gene:Smad6 / 17130 MGIID:1336883 Length:495 Species:Mus musculus


Alignment Length:391 Identity:118/391 - (30%)
Similarity:176/391 - (45%) Gaps:86/391 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 SLVKKLKKRKGAIEELERAL-SCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQS 183
            ||:|:||:|  :::.|..|: |..|.|..||.:||:   .|::..:...|.::..|::||||||.
Mouse   179 SLLKRLKER--SLDTLLEAVESRGGVPGGCVLVPRA---DLRLGGQPAPPQLLLGRLFRWPDLQH 238

  Fly   184 HHELKPLELC-QYPFSAKQKEVCINPYHYKRVESPVLPPVLVPRHSEFAPGHSMLQFNHVAEPSM 247
            ..|||||..| .:..:|....||.||||:.|:..|..||   |.:|..:|            |..
Mouse   239 AVELKPLCGCHSFTAAADGPTVCCNPYHFSRLCGPESPP---PPYSRLSP------------PDQ 288

  Fly   248 PHNVSYSNSGFNSHSLSTSNTSVGSPSSVNSNPNSPYDSLAGTPPPAYSPSEDGNSNNPNDGGQL 312
                      :....||.|..|.....:.||...:|                          |:.
Mouse   289 ----------YKPLDLSDSTLSYTETEATNSLITAP--------------------------GEF 317

  Fly   313 LDAQMGDVAQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIV-------DGFTNPSNNSDRCC 370
            .||.|...|    ::|:.|.|:||:|...|||.::...:.:|.:       .||          |
Mouse   318 SDASMSPDA----TKPSHWCSVAYWEHRTRVGRLYAVYDQAVSIFYDLPQGSGF----------C 368

  Fly   371 LGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIP 435
            ||||:...|:.::..||..||.|:.|......|:|....:..|||.|...:...| ....|.|:|
Mouse   369 LGQLNLEQRSESVRRTRSKIGFGILLSKEPDGVWAYNRGEHPIFVNSPTLDAPGG-RALVVRKVP 432

  Fly   436 PGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHL 500
            ||.|:|:| :.|.:.||..:     :|.:......::|:||.||||..|.||.:||.|||:||.|
Mouse   433 PGYSIKVF-DFERSGLLQHA-----DAAHGPYDPHSVRISFAKGWGPCYSRQFITSCPCWLEILL 491

  Fly   501 H 501
            :
Mouse   492 N 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 38/97 (39%)
MH2_SMAD_1_5_9 325..525 CDD:199822 61/184 (33%)
Smad6NP_032568.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..115
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 133..161
MH1_SMAD_6 161..274 CDD:199817 38/99 (38%)
MH2_SMAD_6 323..493 CDD:199824 62/191 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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