DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mad and Smad3

DIOPT Version :9

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_058049.3 Gene:Smad3 / 17127 MGIID:1201674 Length:425 Species:Mus musculus


Alignment Length:459 Identity:280/459 - (61%)
Similarity:335/459 - (72%) Gaps:54/459 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 LGSLFSFTSPAVKKLLGWKQGD---EEEKWAEKAVDSLVKKLKKRKGAIEELERALSCPGQPSKC 148
            :.|:..||.|.||:|||||:|:   :||||.||||.|||||||| .|.::|||:|::.....:||
Mouse     1 MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKK-TGQLDELEKAITTQNVNTKC 64

  Fly   149 VTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKR 213
            :|||||||||||||||||||||||||:||||||.|||||:.:|||::.|:.|:.|||:|||||:|
Mouse    65 ITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQR 129

  Fly   214 VESPVLPPVLVPRH----SEFAPGHSMLQFNHVAEPSMPHNVSYSNSGFNSHSLSTSNTSVGSPS 274
            ||:|||||||||||    :||.|   :..::|    |:|.|.::                   |:
Mouse   130 VETPVLPPVLVPRHTEIPAEFPP---LDDYSH----SIPENTNF-------------------PA 168

  Fly   275 SVNSNPNSPYDSLAGTPPPAYSPSEDGNS-----NNPNDGG--QLLDAQMG------DVAQVSYS 326
            .:....|.|     .||||.|. ||||.:     |:..|.|  .|....|.      |:..|:|.
Mouse   169 GIEPQSNIP-----ETPPPGYL-SEDGETSDHQMNHSMDAGSPNLSPNPMSPAHNNLDLQPVTYC 227

  Fly   327 EPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIG 391
            |||||.||:|||||.||||.||.:..|:.|||||:|| ||:|.|||.|||||||:.:|.||||||
Mouse   228 EPAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPS-NSERFCLGLLSNVNRNAAVELTRRHIG 291

  Fly   392 KGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSV 456
            :||.|||:.|||:|||||||||||||.|||..:|:||:|||||||||:||||||||||.||:|||
Mouse   292 RGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSV 356

  Fly   457 NNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAI 521
            |.||||||:||:||||||||||||||||.||.|||||||||:||:||||||||||||||||....
Mouse   357 NQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSIRC 421

  Fly   522 SSVS 525
            ||||
Mouse   422 SSVS 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 85/125 (68%)
MH2_SMAD_1_5_9 325..525 CDD:199822 154/199 (77%)
Smad3NP_058049.3 MH1_SMAD_2_3 8..132 CDD:199815 84/124 (68%)
Linker 137..231 36/125 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..208 15/67 (22%)
MH2_SMAD_2_3 224..414 CDD:199826 148/190 (78%)
Sufficient for interaction with XPO4. /evidence=ECO:0000250 271..324 40/52 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X373
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

Return to query results.
Submit another query.