DRSC/TRiP Functional Genomics Resources

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Protein Alignment HTR1D and Oamb

DIOPT Version :10

Sequence 1:NP_000855.1 Gene:HTR1D / 3352 HGNCID:5289 Length:377 Species:Homo sapiens
Sequence 2:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster


Alignment Length:594 Identity:145/594 - (24%)
Similarity:205/594 - (34%) Gaps:249/594 - (41%)


- Green bases have known domain annotations that are detailed below.


Human    20 LNATE-----TSEAW-DPRTLQALKISLAVVLSVITLATVLSNAFVLTTILLTRKLHTPANYLIG 78
            :|.||     .|..| :|..|    |||| ||..|.:..:..|..|:..:..:.||.:..|:.|.
  Fly     1 MNETECEDLIKSVKWTEPANL----ISLA-VLEFINVLVIGGNCLVIAAVFCSNKLRSVTNFFIV 60

Human    79 SLATTDLLVSILVMPISIAYTITHTWNFGQILCDIWLSSDITCCTASILHLCVIALDRYWAITDA 143
            :||..||||.:.|:|.|..:.:...|.||.:.|.|||:.|:..||||||:||.|:||||.|:|..
  Fly    61 NLAVADLLVGLAVLPFSATWEVFKVWIFGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRP 125

Human   144 LEYSKRRTAGHAATMIAIVWAISICISIPPLF-WRQAKA-------------------------- 181
            :.|....:...|.::||.:|.:|..|..|||. |:..||                          
  Fly   126 VTYPSIMSTKKAKSLIAGIWVLSFFICFPPLVGWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQ 190

Human   182 ----------------------------------------------------------------- 181
                                                                             
  Fly   191 LGLDSIKDQGEASLPPSPPHIGNGNAYNPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASS 255

Human   182 ----QEEMSDCLVN--------------------TSQISYTIYSTCGAFYIPSVLLIILYGRIYR 222
                :.||...|:|                    |:...|.:||..|:||||..:::..|.||||
  Fly   256 SSTTETEMDLDLLNAPPQNRPQTISGSCPWKCELTNDRGYVLYSALGSFYIPMFVMLFFYWRIYR 320

Human   223 AA--RNRILNP-------PSLYGKRFTTAHLI-----------------TGSAGSSLCSLNS--- 258
            ||  ..|.:|.       ....|.||....|.                 .||..|:..:|.:   
  Fly   321 AAVRTTRAINQGFKTTKGSKGIGSRFEEQRLTLRIHRGRGSNQQDSMHSNGSTQSTTTTLGTPSP 385

Human   259 ---------SLHE-------------------------GHS-HSAGSPLFFNHVK---------- 278
                     .||.                         ||. ..:|:.||..|..          
  Fly   386 ERLSKYATRRLHHHDKIKISVSYPSSENISELAGHGDVGHERRQSGNALFAVHYNGTNGRESTES 450

Human   279 -----------------------------------------IKLADSALERKRISA-----ARER 297
                                                     .:.|:..:.|:.|.|     ..|.
  Fly   451 QLYRQQQQHGVASSCYLQVGKGLPELARRQSNTSEAGGSGHSRPANKKMGRRNIKAQVKRFRMET 515

Human   298 KATKILGIILGAFIICWLPFFVVSLVLPICRDSCWIHPALFDFFTWLGYLNSLINPIIYTVFNEE 362
            ||.|.|.||:|.||.||.|||.:.::.|.|:| | :.|.||....||||.||.:||:||.:|:::
  Fly   516 KAAKTLAIIVGMFIFCWCPFFTMYIIRPFCQD-C-VDPLLFSVLFWLGYCNSAVNPMIYALFSKD 578

Human   363 FRQAFQKIV 371
            ||.||::|:
  Fly   579 FRFAFKRII 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HTR1DNP_000855.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 1/2 (50%)
7tmA_5-HT1B_1D 35..367 CDD:320455 135/567 (24%)
TM helix 1 40..66 CDD:320455 8/25 (32%)
TM helix 2 73..99 CDD:320455 11/25 (44%)
TM helix 3 111..141 CDD:320455 19/29 (66%)
DRY motif, important for ligand-induced conformation changes. /evidence=ECO:0000250|UniProtKB:P41595 135..137 1/1 (100%)
TM helix 4 153..176 CDD:320455 9/23 (39%)
TM helix 5 194..223 CDD:320455 12/28 (43%)
TM helix 6 294..324 CDD:320455 15/29 (52%)
TM helix 7 335..360 CDD:320455 13/24 (54%)
NPxxY motif, important for ligand-induced conformation changes and signaling. /evidence=ECO:0000250|UniProtKB:P41595 352..356 2/3 (67%)
OambNP_001262774.1 7tmA_Octopamine_R 21..583 CDD:320191 136/568 (24%)
TM helix 1 22..48 CDD:320191 9/26 (35%)
TM helix 2 55..81 CDD:320191 11/25 (44%)
TM helix 3 93..123 CDD:320191 19/29 (66%)
TM helix 4 135..158 CDD:320191 9/22 (41%)
TM helix 5 292..321 CDD:320191 12/28 (43%)
TM helix 6 512..542 CDD:320191 15/29 (52%)
TM helix 7 551..576 CDD:320191 13/24 (54%)

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