DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SerRS and AT5G27470

DIOPT Version :9

Sequence 1:NP_001259982.1 Gene:SerRS / 33518 FlyBaseID:FBgn0031497 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_198099.1 Gene:AT5G27470 / 832806 AraportID:AT5G27470 Length:451 Species:Arabidopsis thaliana


Alignment Length:499 Identity:231/499 - (46%)
Similarity:311/499 - (62%) Gaps:56/499 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VLDLDLFRSDKGGNPDLVRENQKKRFKDVALVETVIAKDTEWRQCRHRADNLNKVKNVCSKVIGE 66
            :||::|||.:||.||:::||:|::||..|.:|:.:|..|.||||.:...|:..|..|..:|.:.:
plant     1 MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLNKQVAQ 65

  Fly    67 KMKKKEPVGAMSEDLPADVTKDLTEIVAETLQPLTVNQIKQLRVLIDDAMTENQKSLELAEQTRN 131
            ...|||               |.:||:.:|      .:.||      |: |..:..:..|.....
plant    66 LKIKKE---------------DASEIIQQT------EKNKQ------DS-TAKEAEVREAYAALK 102

  Fly   132 TSLREVGNHLHESVPVSNDEDENRVERTFGDCEKRGK------YSHVDLIVMIDGMNAEKGAVVS 190
            ..|.:|||.:|:||||..||..|.|.:.:|  |||..      .:||||:.::...:.::||.::
plant   103 AKLEQVGNLVHDSVPVDKDEANNLVIKLWG--EKRFSTPGLKLKNHVDLVELLGIADTKRGAEIA 165

  Fly   191 GGRGYFLTGAAVFLEQALIQHALHLLYARDYVPLYTPFFMRKEVMQEVAQLSQFDEELYKVVGKG 255
            |.||:||.|..:.|.||||...|..|..|.:..|..||||||:||.:.|||:|||||||||.|:|
plant   166 GARGFFLKGDGLMLNQALINFGLTFLKKRGFTGLQPPFFMRKDVMAKCAQLAQFDEELYKVTGEG 230

  Fly   256 SEKAEEVGIDEKYLIATSEQPIAAYHRDEWLPESSLPIKYAGLSTCFRQEVGSHGRDTRGIFRVH 320
                     |:||||||:|||:.|||.|||:..:.||::|||.|:|||:|.|||||||.||||||
plant   231 ---------DDKYLIATAEQPLCAYHIDEWIHPTELPLRYAGYSSCFRKEAGSHGRDTLGIFRVH 286

  Fly   321 QFEKVEQFVLTSPHDNKSWEMMDEMIGNAEQFCQSLGIPYRVVNIVSGALNHAASKKLDLEAWFG 385
            ||||:|||.:|.|::|.||||:|||:.|:|.|.|:|.:||::|:|||||||.||:||.||||||.
plant   287 QFEKIEQFCITGPNENASWEMLDEMMKNSEDFYQALKLPYQIVSIVSGALNDAAAKKYDLEAWFP 351

  Fly   386 GSGAYRELVSCSNCLDYQARRLLVRFGQTKKMNAAVDYVHMLNATMCAATRVICAILETHQTETG 450
            .|..:|||||||||.|||||||.:|:||.|.......||||||:|:.|..|.||.|||.:|.|.|
plant   352 SSETFRELVSCSNCTDYQARRLEIRYGQKKSNEQTKQYVHMLNSTLTATERTICCILENYQREDG 416

  Fly   451 IKVPEPLKKYMPAKFQDEIPF-VKPAPIDLELAAAEKQKGKKEK 493
            :.:||.|:.:|..  :..:|| .||...|        .||||.|
plant   417 VDIPEVLQPFMGG--ETFLPFKAKPVVAD--------TKGKKSK 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerRSNP_001259982.1 PLN02678 3..476 CDD:215364 225/479 (47%)
Seryl_tRNA_N 3..111 CDD:280549 35/107 (33%)
SerRS_core 153..461 CDD:238393 171/313 (55%)
AT5G27470NP_198099.1 PLN02678 1..451 CDD:215364 231/499 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 253 1.000 Domainoid score I513
eggNOG 1 0.900 - - E1_COG0172
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4751
Inparanoid 1 1.050 419 1.000 Inparanoid score I438
OMA 1 1.010 - - QHG60616
OrthoDB 1 1.010 - - D726296at2759
OrthoFinder 1 1.000 - - FOG0004314
OrthoInspector 1 1.000 - - oto3356
orthoMCL 1 0.900 - - OOG6_100275
Panther 1 1.100 - - LDO PTHR11778
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3050
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

Return to query results.
Submit another query.