DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABPI and SWF1

DIOPT Version :9

Sequence 1:NP_608741.1 Gene:GABPI / 33516 FlyBaseID:FBgn0031495 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_010411.1 Gene:SWF1 / 851704 SGDID:S000002533 Length:336 Species:Saccharomyces cerevisiae


Alignment Length:328 Identity:72/328 - (21%)
Similarity:111/328 - (33%) Gaps:125/328 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 VLMLTLVGFTIWGMELAKRTATRTNFFLSWLVFSVFYMIIIFEFQVP------LLELAPEENYAL 182
            :|.:.|:||.:        ....:..|.|...||.||..:...|.|.      .|.|.|      
Yeast     5 LLFVLLIGFVV--------LILLSPVFKSTWPFSTFYRNVFQPFLVDDQKYRWKLHLVP------ 55

  Fly   183 MFFSCAALYCLYSAKALSPLNLVSAQYGTTPKDEL---------------P---GIAEASSGEEQ 229
            :|::...||.:|:         ...:..:|.|:||               |   ||....|..|.
Yeast    56 LFYTSIYLYLVYT---------YHMRVESTIKNELFLLERILIVPIIILPPVALGILAMVSRAED 111

  Fly   230 AEAQTTLQMESVLSLDDDEVGDMDTAERSGLMHGQPNICEICRKVTPRRAYHCPVCGTCVKRRDH 294
            ::              |.:.|..:......|::.....|..||.|.|.|:.||.:|..||...||
Yeast   112 SK--------------DHKSGSTEEYPYDYLLYYPAIKCSTCRIVKPARSKHCSICNRCVLVADH 162

  Fly   295 HSYWLNCCIGERNY--------------------VWYIVGLALSEIALLLGANLTLTSICHPFMV 339
            |..|:|.|||:.||                    :|||   :|:..:.|..|.||||.:|..|.:
Yeast   163 HCIWINNCIGKGNYLQFYLFLISNIFSMCYAFLRLWYI---SLNSTSTLPRAVLTLTILCGCFTI 224

  Fly   340 VRPLGYPVLLPDDCSEVFEGFDLGISFVVACYALLISSYIAFILARQAYL------WWKGSTLHE 398
            :            |:                    |.:|:...:.::...      |:   |:.|
Yeast   225 I------------CA--------------------IFTYLQLAIVKEGMTTNEQDKWY---TIQE 254

  Fly   399 YKR 401
            |.|
Yeast   255 YMR 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABPINP_608741.1 zf-DHHC 262..399 CDD:279823 38/162 (23%)
SWF1NP_010411.1 COG5273 22..336 CDD:227598 68/303 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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