DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABPI and Zdhhc19

DIOPT Version :9

Sequence 1:NP_608741.1 Gene:GABPI / 33516 FlyBaseID:FBgn0031495 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_955013.1 Gene:Zdhhc19 / 245308 MGIID:2682948 Length:347 Species:Mus musculus


Alignment Length:253 Identity:61/253 - (24%)
Similarity:92/253 - (36%) Gaps:63/253 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 LSWLVFSVFYMIIIFEFQVPLLELAPEENYALMFFSCAALYCLYSAKALSP-----------LNL 204
            |||...|||     ..|.|.||..     .:.:||.....:.:.:.:...|           .:|
Mouse    22 LSWFPSSVF-----AAFNVTLLLF-----LSGLFFGFPCRWLVQNGEWAFPAITGPLFILTFFSL 76

  Fly   205 VSAQYGTTPKDELPGIAEASSGEEQAEAQTTLQMESVLSLDDDEVGDMDTAERSGLMHGQPNICE 269
            ||..:..      |||....|.:|                |...|..:...:|:..:..    |.
Mouse    77 VSLNFSD------PGILHRGSTKE----------------DPMTVHVVRVNQRAFRLEW----CP 115

  Fly   270 ICRKVTPRRAYHCPVCGTCVKRRDHHSYWLNCCIGERN---YVWYIVGLALSEIALLLGANLTLT 331
            .|....|.|.||||.|..||:..|||..|:|.|||.||   ::..::.|.|...|||:.....|.
Mouse   116 KCLFHRPPRTYHCPWCNICVEDFDHHCKWVNNCIGHRNFRLFMLLVLSLCLYSGALLVTCLTFLF 180

  Fly   332 SICH-PFMVVRPLGYPVLLPDDCSEVFEGFDLGISFVVACYALLISSYIAFILARQAY 388
            ...| ||.:.:.:...|.:|            ...|::..:.||:...::...|..:|
Mouse   181 RTRHLPFSLDKGMAILVAVP------------AAGFLIPLFLLLLIQALSVSRAESSY 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABPINP_608741.1 zf-DHHC 262..399 CDD:279823 37/131 (28%)
Zdhhc19NP_955013.1 DHHC 109..>181 CDD:366691 27/75 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 275..347
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.