DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABPI and dhhc-5

DIOPT Version :9

Sequence 1:NP_608741.1 Gene:GABPI / 33516 FlyBaseID:FBgn0031495 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_498488.2 Gene:dhhc-5 / 187870 WormBaseID:WBGene00020066 Length:244 Species:Caenorhabditis elegans


Alignment Length:287 Identity:61/287 - (21%)
Similarity:103/287 - (35%) Gaps:83/287 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 RTNFFLS---W-LVFSVFYMIIIFEFQVPLLELAPEENYALMFFS--CAALYCLYSAKALSPLNL 204
            ||.:.|:   | :.|:.:|.||:..:...    .....:||.:|.  ...:.|.|.:.:.:|   
 Worm     5 RTKWVLANIGWPIAFTFWYQIIVVLYAAD----GTISQWALYYFHFLWIIIVCSYFSASFTP--- 62

  Fly   205 VSAQYGTTPKDELPGIAEASSGEEQAEAQTTLQMESVLSLDDDEVGDMDTAERSGLMHGQPNICE 269
                 .|..:|                      :|.|...|.:...|               :|:
 Worm    63 -----PTKCRD----------------------VEKVEHCDKEIKED---------------VCQ 85

  Fly   270 ICRKVTPRRAYHCPVCGTCVKRRDHHSYWLNCCIGERNYVWYIVGLALSEIALLLGANLTLTSIC 334
            :|....|.|.:||..|..||.|.|||...|..||...|:.:::       :.|:....|.:.:|.
 Worm    86 LCNYRKPPRWHHCRRCNLCVHRMDHHCPILQLCIHSGNHKYFL-------LFLVWPLQLAIFTIW 143

  Fly   335 HPF----MVVRPLGYPVLLPDDCSEVFEGFDLGISFVVACYALLISSYIAFILARQAYLWWKGST 395
            |.:    ..:|.:....:|  ..||..:|  .|:|     .||::.....::|..|.....:..|
 Worm   144 HGYYDFWKTIRSVYTAEIL--STSEQLKG--TGVS-----NALMVGIAALYLLKNQLPNLMRNQT 199

  Fly   396 LHEYKR--TSNAAGRNRIWSNWRAILK 420
            |.|..|  ||...|      :|:..:|
 Worm   200 LIEESRENTSYNLG------SWQENVK 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABPINP_608741.1 zf-DHHC 262..399 CDD:279823 34/140 (24%)
dhhc-5NP_498488.2 zf-DHHC 77..202 CDD:279823 35/155 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4031
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.760

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