DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABPI and zdhhc23

DIOPT Version :9

Sequence 1:NP_608741.1 Gene:GABPI / 33516 FlyBaseID:FBgn0031495 Length:420 Species:Drosophila melanogaster
Sequence 2:XP_002939692.1 Gene:zdhhc23 / 100379670 XenbaseID:XB-GENE-940076 Length:414 Species:Xenopus tropicalis


Alignment Length:431 Identity:116/431 - (26%)
Similarity:186/431 - (43%) Gaps:73/431 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SEAEESKSKENGSLCCCEYVAEDSRERSHILGCCCNCVDFDLVCTRLVTCRAIDRRNIDGMLIAF 82
            ||.||       |||||||:.:.. ||||:..|.|:|.|.|..|.|.::.::.........|...
 Frog    15 SETEE-------SLCCCEYINQKG-ERSHLAACLCDCEDVDEACDRWISRKSSQPEVWARALETA 71

  Fly    83 QDRLRLPWRGGAKRISPAAVAPAFIVPLMLGLATLNSKTAIVLMLTLVGFTIWGMELAKRTATRT 147
            .||.|:||..||:||..:.:.|..::|..|.||.|:...|:|.:.:|..|.||...|..|...:|
 Frog    72 SDRFRVPWIRGARRIDVSIIPPLIVLPAALHLAALHVLLAVVTLTSLPIFVIWYYHLTHRRKGKT 136

  Fly   148 NFFLSWLVFSVFYMIIIFEFQVPLLELAPEENYA-LMFFSCAALYCLYSAKALSPLNLVSAQYGT 211
            ..|||..:||:.||...|   |..:.:..:..:. .:..:|..|        |:.|.||..:   
 Frog   137 LLFLSLALFSLGYMYYNF---VQEVFIRGDIGWGHFISITCGLL--------LTLLTLVKVK--- 187

  Fly   212 TPKDELPGI----AEASSGEEQAEAQTTLQMESVLSLD----DDEVGDMDTAERSGLMHGQPNIC 268
                :.||.    |:.|..:.:...:....:::|...|    ....||...||:        |.|
 Frog   188 ----QDPGYLLKHAKDSGMKSEGGCELANGIQTVRDCDGFPQPQTDGDSLVAEK--------NWC 240

  Fly   269 EICRKVTPRRAYHCPVCGTCVKRRDHHSYWLNCCIGERNYVWYIVGLALSEIALLLGANLTLTSI 333
            ::|:.|.|.|:.||.:||.||:|.|||..|:|.|||..|:.::|:.|.......:.|..:||..:
 Frog   241 KMCQLVRPPRSGHCMICGFCVRRLDHHCVWINNCIGSHNHRFFILLLLFFLFTSVYGITVTLNLL 305

  Fly   334 CHPFMVVRPLGYPVLLPDDCSEVFEGFDLGISFVVACYALLISSYIAFILARQAYLWWKGSTLHE 398
            |........|.|       |..|:..:....::....|..::::.:|:||..|..    ..:.:.
 Frog   306 CRGRNAFVALLY-------CPGVYTEYSTAFNYTCVWYCAIVTAGMAYILLIQLI----NISYNV 359

  Fly   399 YKRTSNAAGRNR-------------------IWSNWRAILK 420
            .:|.:..|.||:                   .:.||:..|:
 Frog   360 TEREARIALRNKTARRMFCGLVVDTGAYNQGFFQNWQNFLQ 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABPINP_608741.1 zf-DHHC 262..399 CDD:279823 37/136 (27%)
zdhhc23XP_002939692.1 DHHC 236..363 CDD:366691 38/145 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 97 1.000 Domainoid score I7165
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H17840
Inparanoid 1 1.050 151 1.000 Inparanoid score I4258
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1261879at2759
OrthoFinder 1 1.000 - - FOG0006883
OrthoInspector 1 1.000 - - oto105326
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4988
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

Return to query results.
Submit another query.