DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sf3b2 and sf3b2

DIOPT Version :9

Sequence 1:NP_001259979.1 Gene:Sf3b2 / 33514 FlyBaseID:FBgn0031493 Length:749 Species:Drosophila melanogaster
Sequence 2:XP_002935399.1 Gene:sf3b2 / 100170589 XenbaseID:XB-GENE-5875780 Length:763 Species:Xenopus tropicalis


Alignment Length:660 Identity:389/660 - (58%)
Similarity:477/660 - (72%) Gaps:50/660 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 SQKTGKQSK-AERNKKKKKRKKQNRKIRHQIEFARQQQL----AQAEENEPEAKDS---ETKAHG 175
            ||.:|:.|| |:.:....|..:...||. |::..||::|    |..||.:.:| ||   .|.:..
 Frog   125 SQPSGEDSKEADDSSTGPKIPQVLEKIL-QLKELRQEELVSLPATTEEEDIDA-DSRYVNTASEA 187

  Fly   176 SEDEQV-AEKEKKDKRKESRSKRRKDR--SDEKDTDKKAGEANDENVT-----IEYVPEKITIAD 232
            .||..| ::||||::|:.:|.||.:.|  ..|.....:..||.:.::.     ||||.|:..|.|
 Frog   188 EEDNNVLSKKEKKNRRRRNRKKRTRKRMVGSESAVVDELNEAAEPDLAGGKLEIEYVTEEPDIYD 252

  Fly   233 LAPMYRQFYRVFEIFKL--------ENKPKPVEKDKSSHDSESHPRDKKATDKQLEDE--DDDGD 287
              |.:..|.|:|:.|||        |.:|:.|||.:.:           |..|:.|:|  |:|.|
 Frog   253 --PNFIFFKRIFQAFKLTDDVKREKEKEPEKVEKIEPA-----------APRKRFEEEQMDNDSD 304

  Fly   288 DDEE-RKEDKEKLSKRKLKKLTRLSVAELKQLVSRPDVVEMHDVTARDPKLLVQLKAYRNTVQVP 351
            .||| :|:|..||||:||:::.|.:|||||||||||||||||||||.||||||.||..||:|.||
 Frog   305 SDEEDKKQDAPKLSKKKLRRMNRFTVAELKQLVSRPDVVEMHDVTAPDPKLLVHLKGTRNSVPVP 369

  Fly   352 RHWCFKRKYLQGKRGIEKPPFDLPAFIKKTGIMEMRESLQEREDAKTLKAKMRERVRPKMGKIDI 416
            |||||||||||||||||||||.||.|||:|||.||||:|||:|:.||:|:||||:||||||||||
 Frog   370 RHWCFKRKYLQGKRGIEKPPFQLPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDI 434

  Fly   417 DYQKLHDAFFKWQTKPRMTIHGDLYYEGKEFETRLKEKKPGDLSEELRIALGMPVGPNSHKIPPP 481
            |||||||||||||:||::||||||||||||||||||||||||||:||||.||||||||:||:|||
 Frog   435 DYQKLHDAFFKWQSKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRITLGMPVGPNAHKVPPP 499

  Fly   482 WLIAQQRYGPPPSYPNLKIPGLNAPIPDGTSFGYHAGGWGKPPVDENGKPLYGDVFGTNILDLDN 546
            ||||.||||||||||||||||||:|||:|.||||||||||||||||.||||||||||||..|..:
 Frog   500 WLIAMQRYGPPPSYPNLKIPGLNSPIPEGCSFGYHAGGWGKPPVDEMGKPLYGDVFGTNASDFQS 564

  Fly   547 GVDEADIERNQWGELESESEESSEEEEEDGEDLGDQQDETGLVTPVE-GLVTPSGLTSVPAGMET 610
            ..:|.||:|..|||||...:|||.|||||..| .|:.||||.:||.: ||:||.|.:||||||||
 Frog   565 KNEEEDIDRTPWGELELSDDESSSEEEEDESD-EDKPDETGFITPADSGLITPGGFSSVPAGMET 628

  Fly   611 PENIELRKKKIEAEMEDNETPVLYQVLPEKRTDRIGASMMGSTHVYDVSGSGANKQPPVRSTTDR 675
            ||.|||||||||..|:..|||.|:.|||||||..:|.:||||||:||::.:.:.:    .:.|:.
 Frog   629 PELIELRKKKIEEAMDGTETPQLFTVLPEKRTATVGGAMMGSTHIYDMATAMSRR----GTATEP 689

  Fly   676 EGIVELALDPSELDLDNDAMAQRYEQQMREQQNHLQKEDLSDMLAEHVARQK-SKRKRQQTDPAK 739
            :| ||:||.|.||:||..||.|:||:::||.|..:||||.|||:|||.|:|| .|||.|..|...
 Frog   690 QG-VEIALAPEELELDPSAMTQKYEERVREAQEQVQKEDFSDMVAEHAAKQKQKKRKGQPQDSRA 753

  Fly   740 TTKKYKEFKF 749
            ..||||||||
 Frog   754 GGKKYKEFKF 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3b2NP_001259979.1 CUS1 166..536 CDD:227509 251/391 (64%)
DUF382 320..446 CDD:281964 105/125 (84%)
PSP 451..508 CDD:128850 50/56 (89%)
sf3b2XP_002935399.1 CUS1 <310..573 CDD:227509 213/262 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 287 1.000 Domainoid score I1555
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6678
Inparanoid 1 1.050 710 1.000 Inparanoid score I641
OMA 1 1.010 - - QHG54831
OrthoDB 1 1.010 - - D1275099at2759
OrthoFinder 1 1.000 - - FOG0003115
OrthoInspector 1 1.000 - - oto103906
Panther 1 1.100 - - LDO PTHR12785
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1279
SonicParanoid 1 1.000 - - X2980
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1313.110

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